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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3782531	G-A	HET	INTERGENIC
SBS	Chr1	28129773	C-T	HOMO	INTRON
SBS	Chr1	40906064	A-G	HOMO	INTRON
SBS	Chr2	29145294	G-C	HOMO	INTERGENIC
SBS	Chr3	10778871	G-A	HOMO	INTERGENIC
SBS	Chr3	26436889	T-C	HET	SYNONYMOUS_CODING
SBS	Chr4	7034800	T-C	HOMO	INTERGENIC
SBS	Chr4	13248866	T-G	HOMO	INTERGENIC
SBS	Chr5	11180769	T-C	HET	INTERGENIC
SBS	Chr5	12246315	C-G	HET	INTERGENIC
SBS	Chr5	19361446	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g33030
SBS	Chr5	28733876	C-A	HOMO	STOP_GAINED	LOC_Os05g50130
SBS	Chr5	28733881	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50130
SBS	Chr5	28733882	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g50130
SBS	Chr6	1714430	T-A	HET	INTERGENIC
SBS	Chr6	1867890	T-G	HET	UTR_3_PRIME
SBS	Chr6	1867902	G-T	HET	UTR_3_PRIME
SBS	Chr6	5558767	G-A	HET	UTR_3_PRIME
SBS	Chr6	14529732	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	24526512	G-C	HET	INTRON
SBS	Chr7	18853972	T-C	HET	INTRON
SBS	Chr8	5918063	C-G	HET	INTERGENIC
SBS	Chr8	8359394	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g13950
SBS	Chr8	21349572	T-A	HET	INTRON
SBS	Chr9	9199750	A-G	HOMO	INTERGENIC
SBS	Chr9	21235921	G-A	HOMO	INTRON
SBS	Chr10	13531144	G-A	HET	INTERGENIC
SBS	Chr11	8560438	T-C	HET	INTERGENIC
SBS	Chr12	14689528	G-A	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	1198686	1198689	3
Deletion	Chr3	1955820	1955821	1	LOC_Os03g04260
Deletion	Chr6	1972489	1972493	4
Deletion	Chr11	2764979	2764985	6	LOC_Os11g05880
Deletion	Chr2	4220233	4221507	1274	LOC_Os02g08030
Deletion	Chr8	4593847	4593855	8	LOC_Os08g08090
Deletion	Chr1	4723151	4723152	1
Deletion	Chr3	7188614	7188617	3	LOC_Os03g13320
Deletion	Chr5	9227527	9227531	4
Deletion	Chr11	10174001	10638000	464000	56
Deletion	Chr8	12451571	12451575	4	LOC_Os08g20720
Deletion	Chr10	15393584	15393590	6
Deletion	Chr7	16616067	16616068	1
Deletion	Chr1	17413099	17413100	1
Deletion	Chr10	17807348	17807355	7
Deletion	Chr9	18009981	18009982	1
Deletion	Chr4	20962300	20962306	6	LOC_Os04g34650
Deletion	Chr3	23038759	23038761	2
Deletion	Chr4	27160806	27160814	8
Deletion	Chr1	34864262	34864270	8

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	18910158	18910175	18

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8417131	8424018
Inversion	Chr11	10173471	10497134	LOC_Os11g18600
Inversion	Chr11	10469276	10638049	LOC_Os11g18750

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	22300345	Chr7	19208600
Translocation	Chr9	22300619	Chr7	19208640

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