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| Mutant Information |
|---|
| Mutant Name | FN785-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN785-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12129345 | G-T | HET | INTERGENIC | |
| SBS | Chr1 | 16069972 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 35576406 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 13959154 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 7549302 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 11253626 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 19282401 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 19282404 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 9539692 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 13389223 | C-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 13718516 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g24110 |
| SBS | Chr12 | 24422317 | T-C | HET | INTRON | |
| SBS | Chr12 | 5799135 | G-C | HET | INTERGENIC | |
| SBS | Chr3 | 17817540 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 21775921 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g39210 |
| SBS | Chr3 | 23123639 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 5012741 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 8260871 | A-C | HET | INTERGENIC | |
| SBS | Chr4 | 17416904 | C-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 35352645 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g59460 |
| SBS | Chr5 | 14270425 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 18941752 | G-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27093915 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g46780 |
| SBS | Chr6 | 19513835 | C-T | HET | INTRON | |
| SBS | Chr6 | 23948148 | T-A | HET | INTERGENIC | |
| SBS | Chr8 | 12324413 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 15870121 | G-C | HET | INTERGENIC | |
| SBS | Chr8 | 18183614 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 23407988 | C-A | HET | INTERGENIC | |
| SBS | Chr8 | 27386901 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr9 | 22826158 | A-G | HOMO | INTERGENIC |
Deletions: 25
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 5167171 | 5167180 | 9 | |
| Deletion | Chr2 | 6056602 | 6056611 | 9 | |
| Deletion | Chr6 | 6532315 | 6547003 | 14688 | 2 |
| Deletion | Chr6 | 8018440 | 8018441 | 1 | |
| Deletion | Chr2 | 8777236 | 8777238 | 2 | |
| Deletion | Chr11 | 9539388 | 9539390 | 2 | |
| Deletion | Chr11 | 11253698 | 11253703 | 5 | |
| Deletion | Chr6 | 12603309 | 12603310 | 1 | |
| Deletion | Chr6 | 15057749 | 15057762 | 13 | |
| Deletion | Chr5 | 15204158 | 15204160 | 2 | |
| Deletion | Chr2 | 15429385 | 15429394 | 9 | |
| Deletion | Chr6 | 16101558 | 16101559 | 1 | |
| Deletion | Chr9 | 16130617 | 16130911 | 294 | |
| Deletion | Chr2 | 16637033 | 16637076 | 43 | |
| Deletion | Chr11 | 17078826 | 17078827 | 1 | |
| Deletion | Chr1 | 18307238 | 18307242 | 4 | |
| Deletion | Chr5 | 19254704 | 19254705 | 1 | LOC_Os05g32870 |
| Deletion | Chr8 | 21158997 | 21159003 | 6 | |
| Deletion | Chr7 | 21381171 | 21381175 | 4 | LOC_Os07g35690 |
| Deletion | Chr12 | 22174571 | 22195402 | 20831 | 3 |
| Deletion | Chr1 | 24194287 | 24194288 | 1 | |
| Deletion | Chr5 | 25831419 | 25840864 | 9445 | LOC_Os05g44400 |
| Deletion | Chr5 | 28478565 | 28478566 | 1 | LOC_Os05g49640 |
| Deletion | Chr3 | 28583846 | 28583874 | 28 | |
| Deletion | Chr4 | 30464796 | 30464811 | 15 | LOC_Os04g51440 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 17114665 | 17114665 | 1 | |
| Insertion | Chr3 | 30494179 | 30494180 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 14743971 | 27708255 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 11659251 | Chr7 | 17652881 | |
| Translocation | Chr9 | 11660677 | Chr7 | 17652896 | |
| Translocation | Chr8 | 26917581 | Chr5 | 25831487 | |
| Translocation | Chr8 | 26917587 | Chr5 | 25840830 |