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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8324780	A-G	HET	INTERGENIC
SBS	Chr1	15862234	G-A	HOMO	INTERGENIC
SBS	Chr1	19493616	T-C	HOMO	INTERGENIC
SBS	Chr1	20456357	C-T	HOMO	INTERGENIC
SBS	Chr2	10867285	A-G	HET	INTERGENIC
SBS	Chr2	11535329	T-A	HOMO	INTERGENIC
SBS	Chr2	21064027	A-G	HET	INTERGENIC
SBS	Chr2	23607059	A-C	HET	UTR_5_PRIME
SBS	Chr2	34768141	G-C	HOMO	INTERGENIC
SBS	Chr4	4761374	C-A	HOMO	INTERGENIC
SBS	Chr4	6350233	T-C	HET	INTERGENIC
SBS	Chr4	11830795	C-T	HET	INTERGENIC
SBS	Chr4	20299021	A-T	HET	INTERGENIC
SBS	Chr5	6336268	G-T	HET	INTERGENIC
SBS	Chr5	6784299	T-C	HET	INTERGENIC
SBS	Chr5	8117495	C-A	HET	INTRON
SBS	Chr5	10918245	C-T	HET	INTERGENIC
SBS	Chr5	16378789	C-T	HET	INTERGENIC
SBS	Chr5	29257552	G-A	HET	INTERGENIC
SBS	Chr5	29257553	T-A	HET	INTERGENIC
SBS	Chr6	17115600	T-C	HET	INTERGENIC
SBS	Chr6	30435943	C-T	HET	INTRON
SBS	Chr7	12298513	G-A	HET	INTERGENIC
SBS	Chr7	14901129	C-T	HET	UTR_5_PRIME
SBS	Chr7	22027589	C-T	HOMO	INTERGENIC
SBS	Chr8	18391490	G-C	HOMO	INTERGENIC
SBS	Chr10	17109527	G-A	HET	INTERGENIC
SBS	Chr10	18852446	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g35280
SBS	Chr11	7392568	C-T	HET	INTRON
SBS	Chr11	11308733	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr11	11974037	C-T	HOMO	INTRON
SBS	Chr11	27304108	G-A	HOMO	INTERGENIC
SBS	Chr12	26423959	A-G	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	196147	196153	6	LOC_Os05g01300
Deletion	Chr4	463490	463492	2
Deletion	Chr11	788060	804414	16354	3
Deletion	Chr8	1664924	1664936	12
Deletion	Chr2	3773161	3773194	33
Deletion	Chr12	3947113	3947123	10	LOC_Os12g07810
Deletion	Chr12	4459637	4459648	11	LOC_Os12g08725
Deletion	Chr4	5661877	5661908	31	LOC_Os04g10420
Deletion	Chr5	6372001	6390000	18000	3
Deletion	Chr11	7315717	7315721	4
Deletion	Chr1	8352001	8362000	10000	2
Deletion	Chr11	8966349	8966360	11
Deletion	Chr9	9186829	9186833	4
Deletion	Chr10	11242403	11242411	8
Deletion	Chr1	11366579	11435933	69354	13
Deletion	Chr6	12980626	12996734	16108	3
Deletion	Chr2	13562822	13562852	30
Deletion	Chr2	14618912	14619492	580
Deletion	Chr8	20020148	20020265	117
Deletion	Chr3	20880338	20880346	8
Deletion	Chr12	22283000	23141538	858538	130
Deletion	Chr2	22986771	22986778	7
Deletion	Chr11	26413963	26413966	3
Deletion	Chr7	27801052	27801097	45
Deletion	Chr5	28776362	28776366	4
Deletion	Chr5	29363164	29363171	7
Deletion	Chr3	29792725	29792737	12
Deletion	Chr2	32613286	32613287	1	LOC_Os02g53280
Deletion	Chr1	37026858	37026879	21	LOC_Os01g63820

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	30434909	30434912	4
Insertion	Chr7	1455532	1455543	12
Insertion	Chr11	7192664	7192666	3
Insertion	Chr3	30434921	30434923	3
Insertion	Chr1	14275371	14275372	2
Insertion	Chr2	21772174	21772175	2
Insertion	Chr9	4289552	4289552	1

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6371215	6407170
Inversion	Chr5	6389828	6408146
Inversion	Chr5	6407185	12999895
Inversion	Chr5	6408142	12999882
Inversion	Chr2	12077386	17190738	LOC_Os02g29030
Inversion	Chr12	22283015	23197212	LOC_Os12g37780
Inversion	Chr12	23141536	23197080	LOC_Os12g37780
Inversion	Chr1	30299293	30470106

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	29549601	Chr2	14618916	LOC_Os03g51620

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