Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10082103	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g18020
SBS	Chr1	10849895	C-T	HET	INTERGENIC
SBS	Chr1	14170742	T-A	HET	INTERGENIC
SBS	Chr1	19155951	C-T	HET	INTERGENIC
SBS	Chr1	25848513	C-T	HET	INTERGENIC
SBS	Chr1	26592249	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	30985422	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g53890
SBS	Chr1	32696275	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g56660
SBS	Chr1	34815254	C-A	HET	INTERGENIC
SBS	Chr10	582253	T-C	HOMO	INTERGENIC
SBS	Chr10	6443892	A-T	HET	STOP_GAINED	LOC_Os10g11672
SBS	Chr11	27142444	G-A	HET	INTERGENIC
SBS	Chr11	27142445	C-A	HET	INTERGENIC
SBS	Chr11	9949004	A-G	HOMO	INTRON
SBS	Chr12	18011404	G-A	HOMO	INTERGENIC
SBS	Chr12	4334185	A-G	HOMO	UTR_3_PRIME
SBS	Chr2	15676946	G-A	HET	INTRON
SBS	Chr2	19221150	A-G	HET	INTRON
SBS	Chr2	3959736	T-A	HOMO	INTERGENIC
SBS	Chr2	4367213	A-G	HET	INTERGENIC
SBS	Chr2	6056748	G-A	HOMO	INTERGENIC
SBS	Chr2	9333481	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g16380
SBS	Chr3	11171011	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g19860
SBS	Chr3	21273927	G-T	HOMO	INTERGENIC
SBS	Chr4	4254068	T-C	HOMO	INTERGENIC
SBS	Chr5	10037400	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g17470
SBS	Chr5	22697776	A-C	HOMO	INTERGENIC
SBS	Chr5	29053005	T-A	HET	INTERGENIC
SBS	Chr5	29390775	G-T	HET	INTERGENIC
SBS	Chr5	8142875	C-A	HET	INTERGENIC
SBS	Chr6	25436219	C-T	HET	INTERGENIC
SBS	Chr6	9266511	A-G	HET	INTERGENIC
SBS	Chr7	22606355	G-A	HOMO	INTERGENIC
SBS	Chr7	24555291	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g41050
SBS	Chr7	27502423	G-A	HET	INTRON
SBS	Chr8	1001007	G-A	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1362113	1362140	27
Deletion	Chr8	4651511	4651514	3	LOC_Os08g08170
Deletion	Chr3	4827976	4828027	51
Deletion	Chr5	5266922	5266923	1
Deletion	Chr8	9688690	9688693	3	LOC_Os08g15900
Deletion	Chr3	10479447	10479453	6
Deletion	Chr6	12180778	12180779	1
Deletion	Chr1	12401001	12559000	158000	21
Deletion	Chr12	13032021	13032022	1
Deletion	Chr7	16638416	16638422	6
Deletion	Chr4	17363001	17432000	69000	6
Deletion	Chr11	21251592	21251606	14
Deletion	Chr9	22278001	22334000	56000	12
Deletion	Chr5	22686032	22686037	5
Deletion	Chr1	25085242	25085255	13
Deletion	Chr1	26592027	26592028	1	LOC_Os01g46700
Deletion	Chr12	26788904	26788905	1
Deletion	Chr8	27410379	27410380	1	LOC_Os08g43380
Deletion	Chr8	28361044	28361045	1
Deletion	Chr3	28654999	28655029	30
Deletion	Chr3	30520244	30520271	27	2
Deletion	Chr3	31839400	31839410	10
Deletion	Chr4	34048829	34048830	1	LOC_Os04g57140

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	7339092	7339092	1
Insertion	Chr11	26327390	26327392	3
Insertion	Chr2	22707659	22707660	2
Insertion	Chr2	6482240	6482240	1
Insertion	Chr3	15780243	15780244	2
Insertion	Chr5	22391356	22391356	1
Insertion	Chr6	22815881	22815881	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	11284570	11784293	LOC_Os01g21120
Inversion	Chr1	11284592	11784295	LOC_Os01g21120

No Translocation

Main menu