Search Results
| Mutant Information |
|---|
| Mutant Name | FN789-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN789-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 11717785 | G-A | HET | INTRON | |
| SBS | Chr2 | 12374968 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr3 | 7805850 | G-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr3 | 21837636 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 26780184 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 27533152 | C-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 12140692 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g20710 |
| SBS | Chr7 | 14356296 | C-T | HET | INTRON | |
| SBS | Chr7 | 15139162 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 9693859 | T-C | HET | INTRON | |
| SBS | Chr8 | 18798998 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 1919949 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 17878320 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g29420 |
| SBS | Chr9 | 20425049 | A-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 6968748 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g12530 |
| SBS | Chr10 | 7024609 | A-T | HOMO | INTRON | |
| SBS | Chr10 | 14610155 | T-A | HET | STOP_GAINED | LOC_Os10g28140 |
| SBS | Chr10 | 15230410 | G-A | HET | INTRON | |
| SBS | Chr10 | 18352125 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 24893690 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 142178 | A-T | HET | INTERGENIC | |
| SBS | Chr12 | 452964 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 16318076 | A-C | HET | INTERGENIC | |
| SBS | Chr12 | 19524148 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 25035486 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g40460 |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 3225255 | 3225274 | 19 | |
| Deletion | Chr10 | 3916030 | 3916035 | 5 | |
| Deletion | Chr10 | 6104635 | 6104677 | 42 | |
| Deletion | Chr1 | 6876515 | 6876516 | 1 | |
| Deletion | Chr8 | 7648832 | 7673829 | 24997 | 2 |
| Deletion | Chr8 | 7649001 | 8195000 | 546000 | 85 |
| Deletion | Chr12 | 7666589 | 7666590 | 1 | |
| Deletion | Chr12 | 8303185 | 8303193 | 8 | |
| Deletion | Chr12 | 8797140 | 8797142 | 2 | LOC_Os12g15400 |
| Deletion | Chr1 | 11022017 | 11051455 | 29438 | LOC_Os01g19470 |
| Deletion | Chr8 | 13481059 | 13481079 | 20 | |
| Deletion | Chr3 | 14047757 | 14047763 | 6 | |
| Deletion | Chr12 | 14407681 | 14407685 | 4 | |
| Deletion | Chr2 | 15175487 | 15175493 | 6 | |
| Deletion | Chr2 | 16415032 | 16415050 | 18 | LOC_Os02g27710 |
| Deletion | Chr9 | 18318471 | 18318479 | 8 | |
| Deletion | Chr9 | 19916346 | 19916366 | 20 | |
| Deletion | Chr12 | 22541155 | 22541161 | 6 | |
| Deletion | Chr12 | 23546264 | 23546265 | 1 | |
| Deletion | Chr7 | 24841640 | 24841641 | 1 | |
| Deletion | Chr5 | 25706554 | 25706570 | 16 | |
| Deletion | Chr11 | 27232462 | 27232471 | 9 | |
| Deletion | Chr2 | 29430701 | 29766617 | 335916 | 57 |
| Deletion | Chr1 | 39573995 | 39574000 | 5 |
Insertions: 5
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 1393367 | 1394682 | |
| Inversion | Chr1 | 3720266 | 3838811 | LOC_Os01g07750 |
| Inversion | Chr1 | 3838824 | 3853462 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 7676686 | Chr1 | 3853469 | LOC_Os08g12910 |
| Translocation | Chr8 | 7677065 | Chr1 | 3838830 | LOC_Os08g12910 |
| Translocation | Chr11 | 28165858 | Chr6 | 26697351 |
Tandem duplications: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Tandem Duplication | Chr1 | 3720269 | 3720269 | 0 | LOC_Os01g07750 |