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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10454613	G-C	HET	INTERGENIC
SBS	Chr1	12483496	C-T	HOMO	INTRON
SBS	Chr1	41286505	T-A	HET	INTERGENIC
SBS	Chr1	42362245	C-A	HET	INTERGENIC
SBS	Chr1	970789	G-T	HOMO	INTRON
SBS	Chr11	16262716	T-A	HET	INTERGENIC
SBS	Chr11	17516436	G-A	HOMO	INTERGENIC
SBS	Chr2	23454239	C-A	HET	INTRON
SBS	Chr3	29929028	G-A	HOMO	INTRON
SBS	Chr3	8406828	T-C	HOMO	INTERGENIC
SBS	Chr4	1433380	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g03340
SBS	Chr4	6869452	T-C	HOMO	INTERGENIC
SBS	Chr5	18084675	A-T	HET	INTERGENIC
SBS	Chr5	5743321	A-T	HOMO	INTERGENIC
SBS	Chr5	5900155	A-T	HOMO	INTERGENIC
SBS	Chr6	6097557	G-A	HOMO	UTR_5_PRIME
SBS	Chr7	12794463	A-T	HOMO	INTERGENIC
SBS	Chr7	2406960	T-G	HOMO	INTERGENIC
SBS	Chr8	20444446	G-A	HOMO	INTERGENIC
SBS	Chr9	14079233	C-A	HET	INTERGENIC
SBS	Chr9	6708624	G-A	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	7050416	7050422	6	LOC_Os05g12280
Deletion	Chr12	9940236	9940237	1
Deletion	Chr7	11441758	11442344	586
Deletion	Chr5	15886352	15886353	1
Deletion	Chr4	17580968	17580971	3
Deletion	Chr5	18406221	18406227	6
Deletion	Chr7	19359515	19359517	2
Deletion	Chr9	20570949	20570956	7
Deletion	Chr5	22471370	22471371	1
Deletion	Chr7	26701535	26701536	1	LOC_Os07g44730
Deletion	Chr6	26807814	26812817	5003	LOC_Os06g44410
Deletion	Chr6	26843001	26861000	18000	3
Deletion	Chr11	26873001	27040000	167000	28
Deletion	Chr1	27167200	27167201	1
Deletion	Chr3	34539148	34539154	6	LOC_Os03g60780

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	7365322	7365323	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8436540	8720022	LOC_Os03g15420
Inversion	Chr3	8436556	8720038	LOC_Os03g15420
Inversion	Chr5	19425406	19539773
Inversion	Chr5	19425424	19539799

No Translocation

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