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| Mutant Information |
|---|
| Mutant Name | FN794-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN794-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 19053256 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 13709288 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr11 | 20212128 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g34500 |
| SBS | Chr11 | 26088583 | T-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g43250 |
| SBS | Chr11 | 3993867 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 1898014 | C-T | HOMO | INTRON | |
| SBS | Chr2 | 28993003 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 35141726 | T-G | HET | INTERGENIC | |
| SBS | Chr2 | 5703295 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 6858788 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 16340082 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 29831020 | T-A | HOMO | INTRON | |
| SBS | Chr3 | 7230228 | A-T | HET | INTRON | |
| SBS | Chr3 | 7339375 | A-G | HET | INTERGENIC | |
| SBS | Chr3 | 7398986 | A-G | HET | INTRON | |
| SBS | Chr4 | 17474634 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 22129698 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 2466448 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 29855545 | C-G | HET | INTERGENIC | |
| SBS | Chr6 | 21594659 | G-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 2617627 | C-T | HET | INTRON | |
| SBS | Chr6 | 27901705 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 27901706 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 28349756 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g46670 |
| SBS | Chr7 | 11878482 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 4254650 | G-A | HET | INTRON | |
| SBS | Chr9 | 15701524 | A-G | HOMO | INTERGENIC |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 1723205 | 1723215 | 10 | |
| Deletion | Chr11 | 4175001 | 4194000 | 19000 | 3 |
| Deletion | Chr11 | 4203001 | 4286000 | 83000 | 12 |
| Deletion | Chr6 | 12319027 | 12319030 | 3 | |
| Deletion | Chr2 | 12344238 | 12344240 | 2 | |
| Deletion | Chr8 | 14206802 | 14206815 | 13 | |
| Deletion | Chr9 | 15252955 | 15252957 | 2 | LOC_Os09g25460 |
| Deletion | Chr3 | 16600630 | 16600656 | 26 | |
| Deletion | Chr5 | 17490697 | 17490703 | 6 | |
| Deletion | Chr8 | 18213841 | 18213860 | 19 | |
| Deletion | Chr7 | 19715941 | 19715942 | 1 | LOC_Os07g33000 |
| Deletion | Chr1 | 22747031 | 22747033 | 2 | LOC_Os01g40280 |
| Deletion | Chr11 | 23185897 | 23185900 | 3 | LOC_Os11g38959 |
| Deletion | Chr7 | 26753328 | 26753330 | 2 | |
| Deletion | Chr8 | 27538189 | 27538195 | 6 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 14222005 | 14222005 | 1 | |
| Insertion | Chr10 | 15484897 | 15484898 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 6724206 | 7141963 | |
| Inversion | Chr8 | 19051634 | 19834529 | 2 |
| Inversion | Chr5 | 27222796 | 27422488 | LOC_Os05g47520 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 6724472 | Chr6 | 21596564 |