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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19527423	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g35270
SBS	Chr1	29812226	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51850
SBS	Chr3	14005514	T-C	HET	INTERGENIC
SBS	Chr3	15929047	C-T	HET	INTERGENIC
SBS	Chr3	18815438	C-A	HET	INTERGENIC
SBS	Chr3	32445878	T-C	HET	INTRON
SBS	Chr4	10654892	C-T	HET	INTERGENIC
SBS	Chr4	31014333	A-G	HET	INTERGENIC
SBS	Chr4	33061611	A-G	HET	INTERGENIC
SBS	Chr5	13444333	A-T	HET	INTERGENIC
SBS	Chr5	20309522	A-C	HET	INTRON
SBS	Chr5	23121424	C-T	HET	INTRON
SBS	Chr5	23141353	C-T	HET	INTERGENIC
SBS	Chr6	9693748	G-T	HOMO	INTERGENIC
SBS	Chr6	9693749	A-T	HOMO	INTERGENIC
SBS	Chr6	23838147	A-T	HET	INTERGENIC
SBS	Chr6	24744316	T-A	HOMO	INTERGENIC
SBS	Chr6	27313528	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g45170
SBS	Chr7	24312719	T-A	HOMO	INTRON
SBS	Chr8	5457049	G-A	HET	INTERGENIC
SBS	Chr8	6481005	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	7854425	T-A	HET	INTERGENIC
SBS	Chr8	26265044	A-T	HET	INTRON
SBS	Chr10	394621	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g01600
SBS	Chr10	4799255	A-G	HET	INTERGENIC
SBS	Chr10	14468460	A-G	HET	INTERGENIC
SBS	Chr10	20442376	G-A	HET	INTERGENIC
SBS	Chr12	559876	A-C	HET	INTRON
SBS	Chr12	1259742	G-A	HET	INTERGENIC
SBS	Chr12	16259911	T-A	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	879943	879947	4
Deletion	Chr3	2046871	2046873	2
Deletion	Chr3	3481710	3481712	2	LOC_Os03g06880
Deletion	Chr7	3864156	3864161	5
Deletion	Chr3	8639813	8639839	26
Deletion	Chr12	8984532	8984533	1
Deletion	Chr6	9607001	9691000	84000	8
Deletion	Chr10	13158001	13171000	13000	LOC_Os10g25450
Deletion	Chr11	17971974	17971975	1
Deletion	Chr3	18537001	18566000	29000	6
Deletion	Chr11	20572370	20572374	4	LOC_Os11g35090
Deletion	Chr10	21439522	21439523	1
Deletion	Chr5	26023991	26023994	3	LOC_Os05g44770
Deletion	Chr1	32834835	32834836	1
Deletion	Chr1	35050387	35050396	9

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	9281987	9281988	2
Insertion	Chr7	11143866	11143867	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	15704682	17275177
Inversion	Chr11	15704693	17275183

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1868648	Chr4	7104869
Translocation	Chr11	1868650	Chr7	8590979	LOC_Os07g14970
Translocation	Chr11	1868651	Chr7	8590417	LOC_Os07g14970
Translocation	Chr7	7668872	Chr3	26564238	LOC_Os03g46970
Translocation	Chr7	8590469	Chr4	7105098	LOC_Os07g14970
Translocation	Chr10	13171498	Chr3	27513952	2
Translocation	Chr7	25037419	Chr6	9691284	LOC_Os07g41790
Translocation	Chr7	25037421	Chr6	9691286	LOC_Os07g41790

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