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| Mutant Information |
|---|
| Mutant Name | FN797-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN797-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr10 | 4490047 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 16962645 | T-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 15943162 | T-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 29287453 | A-G | HOMO | UTR_3_PRIME | |
| SBS | Chr2 | 29287477 | C-T | HOMO | UTR_3_PRIME | |
| SBS | Chr2 | 29484865 | A-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 31219136 | T-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 6668773 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 2266743 | C-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 25834734 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr5 | 14785424 | A-C | HET | UTR_3_PRIME | |
| SBS | Chr5 | 16406045 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 5692639 | T-C | HET | INTERGENIC | |
| SBS | Chr6 | 24256953 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 21461588 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 25526074 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr7 | 28002985 | T-C | HOMO | INTRON | |
| SBS | Chr8 | 22648468 | A-G | HET | INTRON | |
| SBS | Chr8 | 23048409 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 3209054 | G-C | HET | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 681780 | 681785 | 5 | |
| Deletion | Chr8 | 3853562 | 3853563 | 1 | LOC_Os08g06900 |
| Deletion | Chr1 | 5700033 | 5700036 | 3 | LOC_Os01g10680 |
| Deletion | Chr12 | 9076835 | 9076849 | 14 | |
| Deletion | Chr3 | 12351098 | 12351103 | 5 | |
| Deletion | Chr10 | 18134379 | 18134390 | 11 | |
| Deletion | Chr12 | 21862935 | 21862939 | 4 | LOC_Os12g35880 |
| Deletion | Chr9 | 22793422 | 22793432 | 10 | LOC_Os09g39740 |
| Deletion | Chr8 | 22809426 | 22809438 | 12 | LOC_Os08g36170 |
| Deletion | Chr12 | 27472634 | 27472641 | 7 | |
| Deletion | Chr4 | 27942001 | 27942002 | 1 | |
| Deletion | Chr3 | 28981929 | 28981949 | 20 | |
| Deletion | Chr2 | 31084048 | 31084050 | 2 | |
| Deletion | Chr1 | 31394851 | 31394855 | 4 | LOC_Os01g54580 |
| Deletion | Chr2 | 32684114 | 32684115 | 1 | |
| Deletion | Chr1 | 36839232 | 36842655 | 3423 | LOC_Os01g63540 |
| Deletion | Chr1 | 39121652 | 39121653 | 1 |
Insertions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 458792 | 458793 | 2 | |
| Insertion | Chr12 | 692137 | 692138 | 2 | |
| Insertion | Chr2 | 10236211 | 10236214 | 4 | |
| Insertion | Chr2 | 20222744 | 20222744 | 1 | LOC_Os02g33930 |
| Insertion | Chr4 | 11260367 | 11260368 | 2 | |
| Insertion | Chr5 | 3455115 | 3455116 | 2 | |
| Insertion | Chr6 | 16535553 | 16535553 | 1 | |
| Insertion | Chr7 | 11629690 | 11629703 | 14 | LOC_Os07g20135 |
| Insertion | Chr9 | 661269 | 661270 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 1542755 | 1756815 | LOC_Os03g03870 |
| Inversion | Chr3 | 1543780 | 1756819 | LOC_Os03g03870 |
| Inversion | Chr3 | 18784205 | 19256769 | LOC_Os03g32830 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 1542756 | Chr1 | 29304829 | |
| Translocation | Chr3 | 1543775 | Chr1 | 29304829 | |
| Translocation | Chr12 | 24683558 | Chr11 | 11901229 |