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Mutant Information |
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Mutant Name | FN798-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN798-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 32
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 7119595 | G-A | HET | INTRON | |
SBS | Chr1 | 8124512 | C-T | HET | INTERGENIC | |
SBS | Chr1 | 26756711 | C-G | HET | INTERGENIC | |
SBS | Chr1 | 35039894 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g60610 |
SBS | Chr2 | 26304188 | T-G | HET | INTERGENIC | |
SBS | Chr2 | 31132809 | A-T | HET | INTERGENIC | |
SBS | Chr2 | 32127299 | A-T | HET | INTRON | |
SBS | Chr3 | 28292237 | C-A | HET | INTERGENIC | |
SBS | Chr4 | 3936605 | C-T | HOMO | INTERGENIC | |
SBS | Chr4 | 23624265 | G-T | HET | INTERGENIC | |
SBS | Chr4 | 29252121 | T-G | HOMO | INTERGENIC | |
SBS | Chr4 | 32638862 | G-T | HOMO | INTERGENIC | |
SBS | Chr5 | 1511906 | T-A | HET | INTERGENIC | |
SBS | Chr5 | 14908966 | C-A | HET | INTERGENIC | |
SBS | Chr5 | 25642582 | A-C | HET | SYNONYMOUS_CODING | |
SBS | Chr5 | 26707114 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g46040 |
SBS | Chr5 | 28985745 | T-C | HET | INTRON | |
SBS | Chr6 | 14868030 | T-A | HOMO | INTERGENIC | |
SBS | Chr6 | 17995273 | A-T | HOMO | UTR_3_PRIME | |
SBS | Chr7 | 16887064 | C-G | HOMO | SYNONYMOUS_CODING | |
SBS | Chr7 | 19044128 | T-C | HET | INTERGENIC | |
SBS | Chr7 | 19156138 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 19304568 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 8807498 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 9884426 | A-C | HET | INTRON | |
SBS | Chr8 | 17595900 | C-A | HET | SYNONYMOUS_CODING | |
SBS | Chr9 | 18548293 | C-T | HOMO | INTRON | |
SBS | Chr9 | 20447472 | G-T | HOMO | INTERGENIC | |
SBS | Chr10 | 17106607 | A-T | HET | INTERGENIC | |
SBS | Chr11 | 24960385 | G-A | HET | INTERGENIC | |
SBS | Chr12 | 14642790 | A-C | HOMO | INTRON | |
SBS | Chr12 | 21863073 | C-G | HOMO | INTRON |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 722001 | 740000 | 18000 | 2 |
Deletion | Chr11 | 5514235 | 5514240 | 5 | |
Deletion | Chr6 | 6000899 | 6000907 | 8 | |
Deletion | Chr5 | 6766001 | 6883000 | 117000 | 17 |
Deletion | Chr12 | 11110807 | 11110808 | 1 | LOC_Os12g19140 |
Deletion | Chr9 | 11658752 | 11658755 | 3 | |
Deletion | Chr1 | 13390276 | 13390278 | 2 | |
Deletion | Chr12 | 18299987 | 18299999 | 12 | |
Deletion | Chr8 | 19452348 | 19452366 | 18 | |
Deletion | Chr10 | 20885989 | 20885995 | 6 | |
Deletion | Chr2 | 21600664 | 21600706 | 42 | |
Deletion | Chr4 | 22812234 | 22812236 | 2 | |
Deletion | Chr2 | 26081998 | 26081999 | 1 | |
Deletion | Chr6 | 26239746 | 26295514 | 55768 | 5 |
Deletion | Chr1 | 31806798 | 31806820 | 22 | |
Deletion | Chr1 | 35905275 | 35907449 | 2174 | LOC_Os01g62040 |
Insertions: 2
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 3959845 | 3959846 | 2 | |
Insertion | Chr10 | 9413777 | 9413778 | 2 | LOC_Os10g18560 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 3803642 | 3925793 | |
Inversion | Chr8 | 3803666 | 3925793 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr10 | 2763029 | Chr2 | 722240 | |
Translocation | Chr10 | 2800064 | Chr2 | 739766 | |
Translocation | Chr12 | 6652104 | Chr5 | 11369966 | 2 |
Translocation | Chr11 | 27105469 | Chr5 | 6766245 |