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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26756711	C-G	HET	INTERGENIC
SBS	Chr1	35039894	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60610
SBS	Chr1	7119595	G-A	HET	INTRON
SBS	Chr1	8124512	C-T	HET	INTERGENIC
SBS	Chr10	17106607	A-T	HET	INTERGENIC
SBS	Chr11	24960385	G-A	HET	INTERGENIC
SBS	Chr12	14642790	A-C	HOMO	INTRON
SBS	Chr12	21863073	C-G	HOMO	INTRON
SBS	Chr2	26304188	T-G	HET	INTERGENIC
SBS	Chr2	31132809	A-T	HET	INTERGENIC
SBS	Chr2	32127299	A-T	HET	INTRON
SBS	Chr3	28292237	C-A	HET	INTERGENIC
SBS	Chr4	23624265	G-T	HET	INTERGENIC
SBS	Chr4	29252121	T-G	HOMO	INTERGENIC
SBS	Chr4	32638862	G-T	HOMO	INTERGENIC
SBS	Chr4	3936605	C-T	HOMO	INTERGENIC
SBS	Chr5	14908966	C-A	HET	INTERGENIC
SBS	Chr5	1511906	T-A	HET	INTERGENIC
SBS	Chr5	25642582	A-C	HET	SYNONYMOUS_CODING
SBS	Chr5	26707114	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g46040
SBS	Chr5	28985745	T-C	HET	INTRON
SBS	Chr6	14868030	T-A	HOMO	INTERGENIC
SBS	Chr6	17995273	A-T	HOMO	UTR_3_PRIME
SBS	Chr7	16887064	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr7	19044128	T-C	HET	INTERGENIC
SBS	Chr7	19156138	C-T	HET	INTERGENIC
SBS	Chr7	19304568	C-T	HET	INTERGENIC
SBS	Chr8	17595900	C-A	HET	SYNONYMOUS_CODING
SBS	Chr8	8807498	C-T	HET	INTERGENIC
SBS	Chr8	9884426	A-C	HET	INTRON
SBS	Chr9	18548293	C-T	HOMO	INTRON
SBS	Chr9	20447472	G-T	HOMO	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	722001	740000	18000	2
Deletion	Chr11	5514235	5514240	5
Deletion	Chr6	6000899	6000907	8
Deletion	Chr5	6766001	6883000	117000	17
Deletion	Chr12	11110807	11110808	1	LOC_Os12g19140
Deletion	Chr9	11658752	11658755	3
Deletion	Chr1	13390276	13390278	2
Deletion	Chr12	18299987	18299999	12
Deletion	Chr8	19452348	19452366	18
Deletion	Chr10	20885989	20885995	6
Deletion	Chr2	21600664	21600706	42
Deletion	Chr4	22812234	22812236	2
Deletion	Chr2	26081998	26081999	1
Deletion	Chr6	26239746	26295514	55768	5
Deletion	Chr1	31806798	31806820	22
Deletion	Chr1	35905275	35907449	2174	LOC_Os01g62040

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	9413777	9413778	2	LOC_Os10g18560
Insertion	Chr12	3959845	3959846	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	3803642	3925793
Inversion	Chr8	3803666	3925793

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2763029	Chr2	722240
Translocation	Chr10	2800064	Chr2	739766
Translocation	Chr12	6652104	Chr5	11369966	2
Translocation	Chr11	27105469	Chr5	6766245

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