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| Mutant Information |
|---|
| Mutant Name | FN799-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN799-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 15043653 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g27000 |
| SBS | Chr1 | 24120874 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 24120880 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 27113660 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 15167024 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 24963559 | A-T | HOMO | INTERGENIC | |
| SBS | Chr11 | 28892733 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os11g47900 |
| SBS | Chr11 | 2914035 | A-G | HOMO | INTRON | |
| SBS | Chr12 | 25473496 | C-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 8313650 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 24560322 | T-G | HOMO | INTRON | |
| SBS | Chr2 | 34755180 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 17724912 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g31120 |
| SBS | Chr3 | 22039075 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 24737302 | T-A | HET | STOP_GAINED | LOC_Os04g41730 |
| SBS | Chr4 | 24737303 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr4 | 5528671 | A-T | HET | INTRON | |
| SBS | Chr6 | 22855392 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 10370136 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 11585870 | C-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 14673617 | A-T | HET | INTRON | |
| SBS | Chr9 | 21940900 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 2264901 | G-C | HET | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1531753 | 1531782 | 29 | |
| Deletion | Chr4 | 8051312 | 8051326 | 14 | |
| Deletion | Chr3 | 9004991 | 9004993 | 2 | LOC_Os03g16310 |
| Deletion | Chr12 | 10803008 | 10803015 | 7 | |
| Deletion | Chr9 | 11363330 | 11363338 | 8 | |
| Deletion | Chr12 | 11815373 | 11815382 | 9 | |
| Deletion | Chr11 | 15673851 | 15792035 | 118184 | 14 |
| Deletion | Chr12 | 19375777 | 19375779 | 2 | |
| Deletion | Chr4 | 19993772 | 19993775 | 3 | |
| Deletion | Chr2 | 21786731 | 21786746 | 15 | |
| Deletion | Chr12 | 22867217 | 22872145 | 4928 | LOC_Os12g37270 |
| Deletion | Chr8 | 24689925 | 24689930 | 5 | |
| Deletion | Chr2 | 25431086 | 25431088 | 2 | |
| Deletion | Chr1 | 27354634 | 27354642 | 8 | |
| Deletion | Chr6 | 30343538 | 30343541 | 3 | |
| Deletion | Chr1 | 33071163 | 33071166 | 3 | |
| Deletion | Chr3 | 35216880 | 35216882 | 2 | |
| Deletion | Chr2 | 35478437 | 35478438 | 1 |
Insertions: 5
No Inversion
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 27769743 | Chr1 | 29676881 |