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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11940316	G-A	HET	INTERGENIC
SBS	Chr1	6057485	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	9936299	T-C	HOMO	INTERGENIC
SBS	Chr10	19061332	T-C	HET	INTERGENIC
SBS	Chr10	20978550	G-T	HET	INTERGENIC
SBS	Chr11	12738525	C-T	HOMO	INTERGENIC
SBS	Chr11	13350542	G-A	HET	INTERGENIC
SBS	Chr12	19767381	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g32720
SBS	Chr2	18682436	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g31190
SBS	Chr2	1967771	C-T	HOMO	UTR_5_PRIME
SBS	Chr2	21559211	G-T	HET	INTRON
SBS	Chr2	8131741	T-G	HET	INTERGENIC
SBS	Chr3	12175248	G-T	HET	INTERGENIC
SBS	Chr3	27348174	C-T	HET	INTRON
SBS	Chr3	4350720	C-T	HOMO	INTERGENIC
SBS	Chr3	9166812	C-T	HOMO	INTERGENIC
SBS	Chr4	1004019	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g02660
SBS	Chr4	23093558	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g38840
SBS	Chr5	2977427	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g05950
SBS	Chr5	8057842	C-T	HET	INTERGENIC
SBS	Chr6	29644025	G-A	HOMO	INTERGENIC
SBS	Chr7	10746202	C-G	HET	INTERGENIC
SBS	Chr7	19856378	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g33224
SBS	Chr7	5763231	A-C	HOMO	INTERGENIC
SBS	Chr7	9932816	G-C	HET	INTERGENIC
SBS	Chr8	18263137	G-A	HOMO	INTERGENIC
SBS	Chr8	28278484	A-G	HET	INTERGENIC
SBS	Chr9	4472255	G-A	HOMO	INTERGENIC
SBS	Chr9	9185396	C-G	HET	INTRON

Deletions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	3199032	3199060	28
Deletion	Chr5	5191552	5193411	1859
Deletion	Chr4	10883001	10919000	36000	6
Deletion	Chr7	11496125	11496146	21
Deletion	Chr9	16512843	16512845	2
Deletion	Chr7	19855349	19857141	1792	LOC_Os07g33224
Deletion	Chr10	20362961	20362973	12	LOC_Os10g38020
Deletion	Chr11	22318887	22318894	7	LOC_Os11g37740
Deletion	Chr2	24833833	24833877	44
Deletion	Chr1	26277133	26277137	4
Deletion	Chr2	29067581	29067582	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	17454917	17454918	2	LOC_Os02g29380
Insertion	Chr3	21038827	21038827	1
Insertion	Chr4	15173707	15173708	2
Insertion	Chr5	19345796	19345796	1
Insertion	Chr9	18736825	18736825	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	28930029	29342126	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	19855353	Chr3	27592680	LOC_Os03g48450
Translocation	Chr7	19856212	Chr3	27592696	2

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