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Mutant Information

Mutant Name	FN804-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN804-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	762794	C-T	HET	INTERGENIC
SBS	Chr1	17673622	A-T	HOMO	INTERGENIC
SBS	Chr1	20426340	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g36766
SBS	Chr1	38105498	T-C	HOMO	INTERGENIC
SBS	Chr1	38105499	G-C	HOMO	INTERGENIC
SBS	Chr2	3941277	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g07620
SBS	Chr2	13887594	G-A	HET	INTERGENIC
SBS	Chr2	24728373	T-A	HOMO	UTR_3_PRIME
SBS	Chr3	19056000	C-G	HET	INTERGENIC
SBS	Chr3	20128985	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36290
SBS	Chr3	20128987	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36290
SBS	Chr3	23478170	T-A	HET	INTERGENIC
SBS	Chr3	24117976	G-A	HET	INTRON
SBS	Chr4	1480339	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	16990451	G-C	HET	INTERGENIC
SBS	Chr5	6713288	T-C	HET	INTERGENIC
SBS	Chr5	6975857	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g12180
SBS	Chr5	18491080	G-A	HOMO	INTERGENIC
SBS	Chr5	21643270	G-T	HOMO	INTERGENIC
SBS	Chr5	25488994	C-A	HET	INTERGENIC
SBS	Chr6	14105068	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	16196322	A-T	HOMO	INTERGENIC
SBS	Chr6	17198706	A-C	HOMO	INTRON
SBS	Chr6	22683825	G-T	HOMO	INTERGENIC
SBS	Chr6	26723607	C-T	HET	INTERGENIC
SBS	Chr7	11702965	T-C	HET	INTERGENIC
SBS	Chr7	11702966	A-C	HET	INTERGENIC
SBS	Chr7	12649161	A-T	HET	INTERGENIC
SBS	Chr7	14690660	C-G	HET	INTERGENIC
SBS	Chr7	21997814	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	28257549	A-G	HET	INTERGENIC
SBS	Chr8	14028313	C-T	HET	INTERGENIC
SBS	Chr8	14028314	C-T	HET	INTERGENIC
SBS	Chr8	26335308	G-C	HET	SYNONYMOUS_CODING
SBS	Chr9	7093626	G-A	HET	INTERGENIC
SBS	Chr9	14756658	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	17789824	G-T	HET	INTERGENIC
SBS	Chr10	1975894	C-A	HOMO	STOP_GAINED	LOC_Os10g04240
SBS	Chr12	6801941	G-A	HET	INTRON
SBS	Chr12	19430946	A-T	HOMO	UTR_5_PRIME
SBS	Chr12	19430947	A-T	HOMO	UTR_5_PRIME

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1166028	1166033	5	LOC_Os04g02920
Deletion	Chr4	1344296	1344345	49
Deletion	Chr3	2159235	2159237	2
Deletion	Chr3	4614642	4614644	2	LOC_Os03g08900
Deletion	Chr1	5792267	5792270	3
Deletion	Chr3	6742725	6742732	7
Deletion	Chr12	8414368	8414369	1
Deletion	Chr11	9202795	9202804	9
Deletion	Chr2	9661316	9661318	2
Deletion	Chr3	9679632	9679657	25
Deletion	Chr1	12988920	12988925	5
Deletion	Chr4	14828001	14837000	9000	3
Deletion	Chr4	14852001	14880000	28000	4
Deletion	Chr3	17077639	17077651	12
Deletion	Chr4	17361372	17361373	1
Deletion	Chr1	17604430	17604440	10
Deletion	Chr9	17937882	17937887	5
Deletion	Chr10	18776566	18776574	8	LOC_Os10g35170
Deletion	Chr12	19483223	19483238	15
Deletion	Chr8	22003824	22003834	10	LOC_Os08g34950
Deletion	Chr6	27290150	27290151	1
Deletion	Chr2	31512386	31512392	6	LOC_Os02g51430
Deletion	Chr2	32361484	32361487	3
Deletion	Chr1	32811085	32811092	7
Deletion	Chr2	33321878	33321883	5	LOC_Os02g54360
Deletion	Chr1	34381370	34381384	14	LOC_Os01g59440
Deletion	Chr3	34440757	34440783	26	LOC_Os03g60610
Deletion	Chr1	34629632	34629640	8	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	15531172	15531172	1
Insertion	Chr6	25000292	25000293	2
Insertion	Chr4	27542955	27542966	12
Insertion	Chr11	7087730	7087731	2
Insertion	Chr2	7763376	7763377	2
Insertion	Chr8	13657406	13657407	2
Insertion	Chr8	27501677	27501677	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	10198415	10201376	LOC_Os02g17690

No Translocation

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