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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12198546	T-A	HET	INTRON
SBS	Chr1	12198547	T-A	HET	INTRON
SBS	Chr1	13198179	C-G	HET	INTERGENIC
SBS	Chr1	15433026	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27670
SBS	Chr1	16947606	G-A	HET	INTERGENIC
SBS	Chr1	25177626	A-G	HET	INTERGENIC
SBS	Chr1	339149	T-C	HET	INTRON
SBS	Chr10	6118756	A-G	HOMO	INTERGENIC
SBS	Chr11	23653238	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	27656682	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g45720
SBS	Chr2	13585720	G-A	HET	INTRON
SBS	Chr2	20282309	T-A	HOMO	INTERGENIC
SBS	Chr3	15357264	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26900
SBS	Chr3	24726259	G-A	HET	INTERGENIC
SBS	Chr3	5948308	A-T	HET	INTRON
SBS	Chr3	5948328	A-G	HET	INTRON
SBS	Chr3	8353173	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	17043762	A-G	HOMO	INTERGENIC
SBS	Chr4	18491790	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g30930
SBS	Chr4	19277885	A-G	HET	INTRON
SBS	Chr4	26321896	T-A	HET	INTERGENIC
SBS	Chr4	32523044	C-T	HOMO	INTERGENIC
SBS	Chr5	20188792	G-A	HET	INTERGENIC
SBS	Chr5	22809400	C-T	HET	INTERGENIC
SBS	Chr7	17738688	C-G	HET	INTERGENIC
SBS	Chr8	14580195	C-T	HET	SYNONYMOUS_CODING
SBS	Chr8	733779	A-T	HOMO	INTRON
SBS	Chr8	733780	A-T	HOMO	INTRON
SBS	Chr9	17217943	G-T	HOMO	INTERGENIC
SBS	Chr9	9695985	C-G	HET	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1950537	1950558	21	LOC_Os07g04390
Deletion	Chr3	5289537	5289556	19
Deletion	Chr11	5753549	5753564	15
Deletion	Chr3	6327787	6327832	45	LOC_Os03g12064
Deletion	Chr1	6786853	6786854	1
Deletion	Chr9	7964657	7964661	4
Deletion	Chr7	8478062	8478067	5
Deletion	Chr5	10095502	10095504	2	LOC_Os05g17570
Deletion	Chr5	10103001	10236000	133000	19
Deletion	Chr11	10683433	10683439	6
Deletion	Chr1	12163758	12164605	847	LOC_Os01g21680
Deletion	Chr1	12226762	12226766	4
Deletion	Chr1	12688886	12688902	16
Deletion	Chr5	13675876	13675879	3
Deletion	Chr6	14765865	14765866	1
Deletion	Chr1	15411323	15411352	29
Deletion	Chr3	15845550	15845552	2
Deletion	Chr1	17594383	17601633	7250	2
Deletion	Chr1	17986350	17986353	3
Deletion	Chr1	18857649	18857658	9
Deletion	Chr12	21247509	21247511	2
Deletion	Chr4	21372915	21372916	1
Deletion	Chr6	21821001	21857000	36000	4
Deletion	Chr11	22421103	22421113	10	LOC_Os11g37850
Deletion	Chr5	22491222	22491223	1
Deletion	Chr6	25402406	25402407	1
Deletion	Chr6	28273543	28301446	27903	5
Deletion	Chr4	34477080	34477089	9
Deletion	Chr3	34504456	34504458	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	5114680	5114681	2
Insertion	Chr7	11008823	11008832	10
Insertion	Chr7	26321214	26321218	5	LOC_Os07g44040

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	4504081	9084489	LOC_Os03g16480
Inversion	Chr5	8119025	10103078	LOC_Os05g17590
Inversion	Chr5	10256446	13381716	2
Inversion	Chr5	10299839	13381720	2
Inversion	Chr5	18530547	18632929

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	22319578	Chr1	32925927
Translocation	Chr3	25805339	Chr1	12164593	LOC_Os03g45730
Translocation	Chr3	28217317	Chr1	12163808	LOC_Os01g21680

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