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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24406459	A-T	HOMO	INTERGENIC
SBS	Chr1	28610688	T-A	HET	INTERGENIC
SBS	Chr1	28610690	T-C	HET	INTERGENIC
SBS	Chr1	31319738	C-T	HET	INTERGENIC
SBS	Chr1	33507187	T-C	HET	SYNONYMOUS_CODING
SBS	Chr10	3103059	A-T	HOMO	INTERGENIC
SBS	Chr10	3701533	A-T	HOMO	INTERGENIC
SBS	Chr11	1405763	T-A	HET	INTRON
SBS	Chr11	1405764	C-A	HET	INTRON
SBS	Chr11	23816458	G-A	HOMO	INTERGENIC
SBS	Chr11	5707395	A-T	HET	INTERGENIC
SBS	Chr12	24576805	A-T	HOMO	INTERGENIC
SBS	Chr12	25660668	G-A	HOMO	INTERGENIC
SBS	Chr12	3419504	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06990
SBS	Chr2	10671673	G-T	HET	INTERGENIC
SBS	Chr2	26991100	T-C	HOMO	INTRON
SBS	Chr3	10591478	G-T	HOMO	UTR_3_PRIME
SBS	Chr3	11545260	A-T	HET	INTERGENIC
SBS	Chr4	16836478	C-T	HOMO	INTERGENIC
SBS	Chr4	19874650	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g32900
SBS	Chr4	9396359	G-T	HOMO	INTERGENIC
SBS	Chr5	10142686	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g17630
SBS	Chr5	19103772	A-T	HET	INTERGENIC
SBS	Chr5	8225646	C-T	HOMO	INTERGENIC
SBS	Chr6	6933482	T-A	HOMO	INTERGENIC
SBS	Chr6	7427128	G-C	HOMO	INTERGENIC
SBS	Chr7	26963169	C-A	HOMO	INTERGENIC
SBS	Chr8	16954967	A-C	HET	INTRON
SBS	Chr8	26853921	C-T	HET	INTERGENIC
SBS	Chr9	10368753	G-A	HET	INTERGENIC
SBS	Chr9	14919048	A-T	HET	INTERGENIC
SBS	Chr9	14919051	T-G	HET	INTERGENIC
SBS	Chr9	14919053	C-T	HET	INTERGENIC
SBS	Chr9	1605038	G-T	HET	INTERGENIC
SBS	Chr9	4992429	A-C	HET	UTR_3_PRIME
SBS	Chr9	5167771	G-A	HET	STOP_GAINED	LOC_Os09g09580
SBS	Chr9	6967415	A-G	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1758652	1758653	1
Deletion	Chr8	5108324	5108326	2
Deletion	Chr2	6914119	6914123	4
Deletion	Chr9	7395580	7395589	9
Deletion	Chr4	9402000	9402019	19
Deletion	Chr6	12923902	12923903	1
Deletion	Chr12	13036590	13036600	10	LOC_Os12g23060
Deletion	Chr6	14031099	14031101	2
Deletion	Chr6	14044682	14045393	711
Deletion	Chr6	14150443	14150503	60
Deletion	Chr8	14488796	14509740	20944	2
Deletion	Chr2	14495430	14495438	8
Deletion	Chr9	15544579	15544584	5
Deletion	Chr8	15738957	15738962	5
Deletion	Chr5	17820001	17867000	47000	4
Deletion	Chr12	20003091	20003105	14
Deletion	Chr7	20242310	20242311	1
Deletion	Chr12	22649507	22649510	3
Deletion	Chr2	28789010	28789017	7
Deletion	Chr2	29509432	29509440	8	LOC_Os02g48194
Deletion	Chr4	35147901	35153442	5541
Deletion	Chr3	35580896	35580898	2
Deletion	Chr1	39179513	39179515	2
Deletion	Chr1	42298017	42298022	5	LOC_Os01g72930

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	24179472	24179473	2
Insertion	Chr3	22281753	22281768	16	LOC_Os03g40100
Insertion	Chr3	459719	459719	1
Insertion	Chr8	21228284	21228284	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	13599404	13987467	2
Inversion	Chr2	14247652	14900588	2
Inversion	Chr5	16615673	16751963
Inversion	Chr5	16615686	17867166

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	3314457	Chr1	19295925	2
Translocation	Chr9	13599402	Chr8	14509619	LOC_Os09g22540
Translocation	Chr4	35147911	Chr1	5041044
Translocation	Chr4	35153436	Chr1	5040998

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