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Mutant Information

Mutant Name	FN807-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN807-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	68334	G-T	HOMO	INTERGENIC
SBS	Chr1	27512384	C-G	HOMO	INTERGENIC
SBS	Chr1	34606895	G-A	HOMO	INTRON
SBS	Chr4	644302	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	10364203	G-A	HET	INTRON
SBS	Chr4	15520306	C-T	HET	INTERGENIC
SBS	Chr4	28070076	G-T	HET	SYNONYMOUS_CODING
SBS	Chr5	820235	T-A	HET	INTERGENIC
SBS	Chr6	8626544	C-T	HET	INTERGENIC
SBS	Chr7	9682906	G-T	HET	INTERGENIC
SBS	Chr7	25312166	A-T	HET	INTERGENIC
SBS	Chr7	29218901	T-A	HET	INTERGENIC
SBS	Chr8	3466997	C-A	HET	INTERGENIC
SBS	Chr8	17431431	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28540
SBS	Chr9	12732269	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g21110
SBS	Chr10	5384461	G-A	HOMO	INTERGENIC
SBS	Chr10	19724554	T-G	HET	INTERGENIC
SBS	Chr12	287314	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	3638361	G-A	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	4030100	4030101	1	LOC_Os11g07870
Deletion	Chr4	4596776	4596779	3
Deletion	Chr8	5048950	5048951	1
Deletion	Chr7	7922179	7922182	3
Deletion	Chr4	10619206	10619208	2
Deletion	Chr9	13036454	13036460	6
Deletion	Chr9	15225274	15225278	4	LOC_Os09g25390
Deletion	Chr12	15776512	15776513	1	LOC_Os12g26940
Deletion	Chr3	16559065	16559066	1
Deletion	Chr4	17895637	17895663	26
Deletion	Chr4	18239611	18239612	1
Deletion	Chr11	18477136	18477153	17
Deletion	Chr3	20101865	20101870	5
Deletion	Chr9	21689475	21689491	16
Deletion	Chr2	21736660	21736665	5
Deletion	Chr11	22540757	22540908	151
Deletion	Chr5	24525939	24525942	3
Deletion	Chr5	25807463	25807471	8
Deletion	Chr4	29030665	29030666	1

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	874921	874922	2
Insertion	Chr3	14495324	14495325	2
Insertion	Chr6	26597810	26597811	2
Insertion	Chr4	3952441	3952445	5
Insertion	Chr2	25125213	25125216	4
Insertion	Chr6	4464678	4464681	4
Insertion	Chr2	28081723	28081724	2	LOC_Os02g46080
Insertion	Chr10	14416901	14416901	1
Insertion	Chr4	9501179	9501179	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	34578536	35540849

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	17911810	Chr5	10199577
Translocation	Chr9	17916336	Chr5	10199566