Search Results
| Mutant Information |
|---|
| Mutant Name | FN808-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN808-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 6525526 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 6525527 | C-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 6525528 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 30660024 | A-T | HET | INTERGENIC | |
| SBS | Chr2 | 32843519 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 34403318 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 24951980 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g42140 |
| SBS | Chr5 | 7488290 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os05g13510 |
| SBS | Chr6 | 15602128 | C-T | HET | STOP_GAINED | LOC_Os06g27560 |
| SBS | Chr6 | 21124640 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 4291157 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 14377532 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 8744254 | C-T | HOMO | INTRON | |
| SBS | Chr8 | 8744255 | C-T | HOMO | INTRON | |
| SBS | Chr8 | 20923209 | T-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 2664826 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os09g04960 |
| SBS | Chr9 | 16900544 | C-T | HET | INTRON | |
| SBS | Chr10 | 7223211 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g13370 |
| SBS | Chr10 | 8605251 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr10 | 11036875 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g21560 |
| SBS | Chr10 | 13645351 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 14685511 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 14685512 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 15423970 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 12931067 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 19449523 | T-A | HET | INTERGENIC |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 6232656 | 6232657 | 1 | |
| Deletion | Chr12 | 7765122 | 7765236 | 114 | |
| Deletion | Chr10 | 11032732 | 11032741 | 9 | |
| Deletion | Chr4 | 11907164 | 11907177 | 13 | LOC_Os04g21150 |
| Deletion | Chr10 | 12481532 | 12481537 | 5 | |
| Deletion | Chr8 | 16212272 | 16212293 | 21 | |
| Deletion | Chr6 | 16731630 | 16731631 | 1 | |
| Deletion | Chr7 | 16971788 | 16971790 | 2 | |
| Deletion | Chr5 | 20065180 | 20065283 | 103 | LOC_Os05g33980 |
| Deletion | Chr2 | 26576656 | 26576665 | 9 | LOC_Os02g44010 |
| Deletion | Chr6 | 26936755 | 26936756 | 1 | |
| Deletion | Chr6 | 28597799 | 28597800 | 1 | |
| Deletion | Chr5 | 28994340 | 28994342 | 2 | |
| Deletion | Chr3 | 30815278 | 30815280 | 2 | |
| Deletion | Chr2 | 31411613 | 31411614 | 1 | |
| Deletion | Chr4 | 35188834 | 35188835 | 1 | LOC_Os04g59150 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 25405813 | 25405814 | 2 | |
| Insertion | Chr8 | 1209775 | 1209784 | 10 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 31071673 | 32459010 | LOC_Os04g52280 |
| Inversion | Chr4 | 32459012 | 33078991 |
No Translocation