Search Results
| Mutant Information |
|---|
| Mutant Name | FN809-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN809-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 33794648 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 4668547 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g09100 |
| SBS | Chr2 | 31885969 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 35104904 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 8558261 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 27018687 | T-C | HET | INTRON | |
| SBS | Chr3 | 27686161 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 21163249 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 33608480 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 12178208 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g20750 |
| SBS | Chr5 | 17013788 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 2617627 | C-T | HOMO | INTRON | |
| SBS | Chr6 | 2655864 | G-A | HOMO | INTRON | |
| SBS | Chr6 | 11204210 | T-A | HOMO | UTR_5_PRIME | |
| SBS | Chr7 | 9959053 | A-G | HOMO | INTERGENIC | |
| SBS | Chr7 | 16549786 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g28350 |
| SBS | Chr8 | 4864184 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 15951285 | C-G | HET | INTERGENIC | |
| SBS | Chr9 | 2511119 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 18091306 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g29760 |
| SBS | Chr10 | 10571513 | A-T | HET | INTRON | |
| SBS | Chr10 | 13256928 | T-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 14113948 | C-G | HOMO | INTERGENIC | |
| SBS | Chr10 | 14113954 | G-A | HOMO | INTERGENIC | |
| SBS | Chr10 | 15110787 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g28990 |
| SBS | Chr10 | 18061752 | A-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 1898014 | C-T | HET | INTRON | |
| SBS | Chr12 | 4515193 | G-C | HET | INTERGENIC | |
| SBS | Chr12 | 22929920 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g37340 |
| SBS | Chr12 | 23120495 | A-T | HOMO | INTRON |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 430522 | 430527 | 5 | |
| Deletion | Chr11 | 2662244 | 2662261 | 17 | |
| Deletion | Chr6 | 6699276 | 6699281 | 5 | LOC_Os06g12360 |
| Deletion | Chr1 | 7358786 | 7358788 | 2 | |
| Deletion | Chr12 | 7818343 | 7818346 | 3 | |
| Deletion | Chr4 | 9615835 | 9615852 | 17 | LOC_Os04g17600 |
| Deletion | Chr1 | 9908222 | 9908242 | 20 | |
| Deletion | Chr7 | 9959096 | 9959112 | 16 | |
| Deletion | Chr11 | 14102750 | 14102765 | 15 | LOC_Os11g24760 |
| Deletion | Chr7 | 17648952 | 17648957 | 5 | |
| Deletion | Chr4 | 20060006 | 20060023 | 17 | |
| Deletion | Chr1 | 20141382 | 20141384 | 2 | LOC_Os01g36320 |
| Deletion | Chr12 | 21526783 | 21526786 | 3 | LOC_Os12g35395 |
| Deletion | Chr12 | 21526789 | 21526792 | 3 | LOC_Os12g35395 |
| Deletion | Chr4 | 21626806 | 21626808 | 2 | LOC_Os04g35520 |
| Deletion | Chr1 | 24191641 | 24191662 | 21 | |
| Deletion | Chr7 | 28421783 | 28421786 | 3 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 20239916 | 20239917 | 2 | |
| Insertion | Chr2 | 17850754 | 17850755 | 2 | |
| Insertion | Chr3 | 10812124 | 10812124 | 1 |
No Inversion
No Translocation