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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	833170	T-C	HET	INTERGENIC
SBS	Chr1	14085252	G-A	HET	INTERGENIC
SBS	Chr2	11063021	T-A	HET	INTERGENIC
SBS	Chr2	25464718	A-T	HET	INTERGENIC
SBS	Chr2	25464719	A-T	HET	INTERGENIC
SBS	Chr2	27453321	T-G	HOMO	INTERGENIC
SBS	Chr2	31768319	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g51860
SBS	Chr3	8407261	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15360
SBS	Chr3	8407262	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	19055283	A-T	HET	INTERGENIC
SBS	Chr4	1675668	T-G	HET	INTERGENIC
SBS	Chr4	19806264	C-T	HET	INTERGENIC
SBS	Chr5	4824578	G-A	HOMO	INTERGENIC
SBS	Chr5	5524760	C-A	HOMO	INTRON
SBS	Chr5	20529154	T-A	HOMO	INTRON
SBS	Chr6	1720016	A-C	HET	INTERGENIC
SBS	Chr6	24506904	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g41030
SBS	Chr7	6566411	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11860
SBS	Chr7	6796747	T-C	HET	INTERGENIC
SBS	Chr7	17508667	A-G	HET	UTR_3_PRIME
SBS	Chr7	18157439	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30690
SBS	Chr7	27026799	G-A	HOMO	INTERGENIC
SBS	Chr8	9573849	C-T	HET	INTERGENIC
SBS	Chr8	19528591	G-T	HET	UTR_3_PRIME
SBS	Chr8	19546808	A-G	HET	INTERGENIC
SBS	Chr9	2043205	C-G	HOMO	INTERGENIC
SBS	Chr9	12254133	C-A	HOMO	INTERGENIC
SBS	Chr9	18779113	G-A	HOMO	INTERGENIC
SBS	Chr10	3303444	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g06430
SBS	Chr10	3303451	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	8892375	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g15690
SBS	Chr11	18673958	A-C	HET	INTERGENIC
SBS	Chr11	20675122	A-T	HOMO	INTRON
SBS	Chr12	8559842	T-C	HOMO	INTERGENIC
SBS	Chr12	23083752	C-T	HET	INTRON
SBS	Chr12	26269869	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	26269870	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g42280

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1734475	1751867	17392	3
Deletion	Chr2	2946880	2946890	10	LOC_Os02g05930
Deletion	Chr3	3529933	3532050	2117	LOC_Os03g06940
Deletion	Chr9	4212362	4212370	8
Deletion	Chr9	4307452	4307504	52
Deletion	Chr1	6856332	6856336	4
Deletion	Chr11	8109091	8109092	1
Deletion	Chr2	9965166	9965334	168
Deletion	Chr5	10891944	10891954	10
Deletion	Chr11	10921385	10921387	2
Deletion	Chr10	11338394	11338404	10	LOC_Os10g21956
Deletion	Chr3	11361281	11361291	10
Deletion	Chr11	11836793	11836796	3	LOC_Os11g20450
Deletion	Chr4	14717560	14717561	1
Deletion	Chr10	15524602	15524611	9	LOC_Os10g29880
Deletion	Chr7	16654429	16654771	342	LOC_Os07g28460
Deletion	Chr4	17215367	17215368	1
Deletion	Chr6	17429001	17445000	16000	3
Deletion	Chr8	18273530	18273542	12
Deletion	Chr7	19058448	19058449	1
Deletion	Chr6	19787791	19787815	24
Deletion	Chr12	21487234	21487236	2
Deletion	Chr1	28399360	28399369	9
Deletion	Chr7	28523208	28523211	3
Deletion	Chr2	31376553	31376555	2
Deletion	Chr1	34171982	34171995	13
Deletion	Chr1	40107058	40107060	2	LOC_Os01g69030
Deletion	Chr1	41760929	41760967	38

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	3368803	3368803	1
Insertion	Chr1	12149114	12149115	2
Insertion	Chr8	10678210	10678211	2
Insertion	Chr4	8338683	8338683	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2599598	17444895	LOC_Os06g30230
Inversion	Chr6	4981651	5200655
Inversion	Chr8	19133721	19721477	2
Inversion	Chr12	26198775	26515388
Inversion	Chr12	26347210	26515380	LOC_Os12g42400
Inversion	Chr12	26347343	26621215	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2681122	Chr3	3531605
Translocation	Chr3	3529943	Chr2	20022273	LOC_Os03g06940
Translocation	Chr4	15988784	Chr1	15631042	LOC_Os04g27020
Translocation	Chr7	16654723	Chr4	2250194	2

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