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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17752437	C-T	HOMO	INTERGENIC
SBS	Chr1	17833819	G-T	HOMO	INTERGENIC
SBS	Chr1	20335370	C-T	HOMO	INTERGENIC
SBS	Chr1	24482393	T-C	HET	INTRON
SBS	Chr1	29367766	C-T	HET	UTR_3_PRIME
SBS	Chr1	30163569	C-A	HET	INTERGENIC
SBS	Chr1	35689381	C-A	HET	INTRON
SBS	Chr1	36316257	G-A	HET	INTERGENIC
SBS	Chr1	38653332	G-T	HET	INTRON
SBS	Chr10	17583134	G-A	HET	INTERGENIC
SBS	Chr11	13437986	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g23760
SBS	Chr11	13530482	G-A	HET	INTERGENIC
SBS	Chr11	1441870	T-A	HET	INTERGENIC
SBS	Chr11	15233749	A-G	HET	INTERGENIC
SBS	Chr11	6459691	G-C	HET	INTERGENIC
SBS	Chr12	10271759	G-T	HET	INTERGENIC
SBS	Chr12	10312096	G-A	HET	INTERGENIC
SBS	Chr12	10500007	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g18190
SBS	Chr12	13311053	C-A	HET	SYNONYMOUS_CODING
SBS	Chr12	4972445	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g09480
SBS	Chr3	5392740	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g10580
SBS	Chr4	13729900	G-T	HET	INTERGENIC
SBS	Chr4	19595768	T-C	HOMO	INTERGENIC
SBS	Chr4	19601359	A-T	HOMO	UTR_3_PRIME
SBS	Chr4	19601360	A-T	HOMO	UTR_3_PRIME
SBS	Chr5	1122048	C-T	HOMO	INTERGENIC
SBS	Chr6	30719088	G-A	HOMO	INTRON
SBS	Chr6	5111272	G-A	HOMO	INTERGENIC
SBS	Chr6	5827590	A-G	HET	INTERGENIC
SBS	Chr6	7400720	C-T	HET	INTERGENIC
SBS	Chr6	7400721	C-T	HET	INTERGENIC
SBS	Chr7	17743284	T-C	HOMO	INTERGENIC
SBS	Chr8	12324413	C-T	HOMO	INTERGENIC
SBS	Chr8	17341933	A-G	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	205121	205122	1
Deletion	Chr1	1102340	1102351	11
Deletion	Chr10	1396573	1396590	17	LOC_Os10g03300
Deletion	Chr1	2256516	2256519	3
Deletion	Chr6	5827660	5827671	11
Deletion	Chr6	6109971	6109976	5
Deletion	Chr6	6390442	6390469	27
Deletion	Chr12	8691001	8734000	43000	5
Deletion	Chr6	9924308	9924316	8
Deletion	Chr2	11359687	11360579	892
Deletion	Chr5	13827323	13827324	1
Deletion	Chr3	16264458	16264475	17	LOC_Os03g28270
Deletion	Chr7	19411911	19411915	4
Deletion	Chr7	21812780	21812799	19
Deletion	Chr1	21890554	21890556	2
Deletion	Chr1	23397770	23397771	1	LOC_Os01g41350
Deletion	Chr2	25861399	25861407	8
Deletion	Chr1	27219585	27219590	5
Deletion	Chr7	27250007	27250393	386
Deletion	Chr6	30842782	30842783	1
Deletion	Chr2	32789001	32789016	15
Deletion	Chr4	35074674	35074677	3	LOC_Os04g58960

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	32775225	32775227	3
Insertion	Chr9	15076971	15077007	37
Insertion	Chr9	15428300	15428301	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	2141249	2528461	LOC_Os06g04880
Inversion	Chr6	2141289	2528492	LOC_Os06g04880
Inversion	Chr3	21767235	23414555

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	11360312	Chr1	20709932
Translocation	Chr2	11360582	Chr1	20710008
Translocation	Chr3	22994865	Chr2	13225705	2

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