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Mutant Information

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35235832	G-A	HET	INTERGENIC
SBS	Chr1	42554068	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g73430
SBS	Chr1	5064277	A-C	HOMO	INTRON
SBS	Chr10	19830167	C-T	HET	INTRON
SBS	Chr11	14164428	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g24840
SBS	Chr11	21011382	T-A	HET	INTRON
SBS	Chr11	21179494	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g36030
SBS	Chr11	25825917	T-A	HOMO	INTERGENIC
SBS	Chr12	108757	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g01190
SBS	Chr12	19921218	T-A	HET	INTERGENIC
SBS	Chr12	26258647	G-A	HET	INTERGENIC
SBS	Chr3	19047920	A-G	HET	INTRON
SBS	Chr3	22386590	C-T	HET	INTERGENIC
SBS	Chr3	33715417	G-A	HET	INTERGENIC
SBS	Chr3	34355514	G-A	HET	INTERGENIC
SBS	Chr4	18592804	T-G	HET	INTRON
SBS	Chr4	33511067	G-A	HOMO	INTERGENIC
SBS	Chr4	7514772	A-G	HET	SYNONYMOUS_CODING
SBS	Chr5	11305981	G-C	HET	INTERGENIC
SBS	Chr6	4259393	G-A	HOMO	INTRON
SBS	Chr7	14039363	C-T	HET	INTERGENIC
SBS	Chr7	28588960	A-G	HET	INTRON
SBS	Chr8	6102	C-T	HET	INTERGENIC
SBS	Chr9	11027962	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g18010
SBS	Chr9	16512749	G-A	HOMO	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	987300	987301	1
Deletion	Chr6	1453901	1453907	6
Deletion	Chr6	4257404	4257410	6	LOC_Os06g08560
Deletion	Chr11	4815718	4815728	10
Deletion	Chr2	5829154	5829157	3
Deletion	Chr2	6956154	6956167	13
Deletion	Chr3	8711157	8711162	5
Deletion	Chr10	9625776	9625778	2
Deletion	Chr10	11209388	11209389	1
Deletion	Chr4	12254691	12254724	33
Deletion	Chr7	17499781	17499794	13
Deletion	Chr4	18335111	18335123	12
Deletion	Chr9	18680961	18680962	1
Deletion	Chr3	18929001	18956000	27000	5
Deletion	Chr5	19374959	19374966	7
Deletion	Chr2	19497997	19498000	3
Deletion	Chr2	19724674	19724682	8	LOC_Os02g33170
Deletion	Chr11	20999802	20999809	7	LOC_Os11g35770
Deletion	Chr11	21289022	21289029	7
Deletion	Chr5	23348109	23348141	32
Deletion	Chr11	23983819	23983836	17
Deletion	Chr4	24727772	24727773	1	LOC_Os04g41710
Deletion	Chr3	26725857	26725858	1
Deletion	Chr1	35911419	35911425	6

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	4888630	4888633	4
Insertion	Chr3	181913	181914	2
Insertion	Chr7	9166822	9166823	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5301142	5303637	LOC_Os07g09950
Inversion	Chr7	5301279	5303641	LOC_Os07g09950

No Translocation

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