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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3973512	C-T	HET	INTERGENIC
SBS	Chr1	19518787	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35254
SBS	Chr1	24413184	C-T	HET	INTERGENIC
SBS	Chr1	31747376	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g55180
SBS	Chr1	33404613	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57760
SBS	Chr2	4194148	T-C	HET	INTERGENIC
SBS	Chr2	14710557	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25260
SBS	Chr3	34738761	A-G	HET	INTERGENIC
SBS	Chr4	6296224	C-G	HET	INTRON
SBS	Chr6	4372625	G-A	HET	INTRON
SBS	Chr6	13220265	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g22730
SBS	Chr6	22129511	G-A	HET	INTERGENIC
SBS	Chr7	14458091	C-T	HOMO	INTRON
SBS	Chr8	4288780	T-C	HET	INTERGENIC
SBS	Chr9	1876004	C-A	HOMO	INTERGENIC
SBS	Chr9	10050665	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	10310495	C-T	HOMO	INTERGENIC
SBS	Chr10	3207169	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g06250
SBS	Chr10	17247055	C-A	HET	INTERGENIC
SBS	Chr11	1272055	T-C	HOMO	INTERGENIC
SBS	Chr12	4007031	C-T	HOMO	INTRON
SBS	Chr12	15132237	T-G	HOMO	INTRON
SBS	Chr12	26049422	A-T	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	417140	417142	2
Deletion	Chr11	1274821	1274829	8	LOC_Os11g03380
Deletion	Chr8	2335148	2335158	10
Deletion	Chr3	3555381	3555390	9
Deletion	Chr1	3910333	3910339	6
Deletion	Chr5	4715514	4715523	9
Deletion	Chr11	5201873	5201882	9
Deletion	Chr6	7628156	7628219	63
Deletion	Chr12	11266833	11266838	5
Deletion	Chr11	11953558	11953560	2
Deletion	Chr10	16357583	16357590	7
Deletion	Chr11	16843197	16843198	1	LOC_Os11g29074
Deletion	Chr5	17035141	17035150	9
Deletion	Chr11	21155777	21155800	23
Deletion	Chr6	24063552	24063558	6	LOC_Os06g40410
Deletion	Chr8	25436281	25442987	6706	3
Deletion	Chr6	28850963	28850983	20
Deletion	Chr1	31655240	31655526	286
Deletion	Chr1	35361699	35361711	12

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr7	21400074	21400075	2
Insertion	Chr12	9585983	9585984	2
Insertion	Chr2	18552323	18552324	2
Insertion	Chr7	3549873	3549874	2
Insertion	Chr3	26504104	26504104	1

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	14842568	Chr1	31655516	LOC_Os01g55050
Translocation	Chr9	14842578	Chr1	31655246	LOC_Os01g55050
Translocation	Chr12	27391441	Chr8	25442988	LOC_Os12g44150
Translocation	Chr12	27391450	Chr8	25436457	LOC_Os12g44150

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