Search Results
| Mutant Information |
|---|
| Mutant Name | FN818-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN818-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 19082203 | G-A | HOMO | INTRON | |
| SBS | Chr1 | 19335458 | A-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 25883862 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 30486174 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 26464138 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 27482838 | T-A | HET | INTRON | |
| SBS | Chr3 | 5891402 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g11430 |
| SBS | Chr3 | 35625782 | A-T | HET | UTR_5_PRIME | |
| SBS | Chr4 | 486057 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr4 | 13457315 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g23530 |
| SBS | Chr4 | 26896826 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 32655525 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 2560505 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 11442028 | G-A | HET | INTRON | |
| SBS | Chr7 | 10569926 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 22811119 | C-T | HOMO | INTRON | |
| SBS | Chr9 | 1517780 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 8442628 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g14280 |
| SBS | Chr10 | 9473808 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 7019685 | G-C | HET | INTERGENIC | |
| SBS | Chr11 | 16166020 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 27258291 | G-T | HOMO | INTERGENIC |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2142661 | 2142680 | 19 | |
| Deletion | Chr3 | 5019897 | 5020264 | 367 | |
| Deletion | Chr9 | 5301002 | 5301006 | 4 | LOC_Os09g09780 |
| Deletion | Chr6 | 9536453 | 9536455 | 2 | |
| Deletion | Chr12 | 10945339 | 10945359 | 20 | |
| Deletion | Chr11 | 11028446 | 11028449 | 3 | |
| Deletion | Chr2 | 12025080 | 12025081 | 1 | LOC_Os02g20410 |
| Deletion | Chr3 | 12569713 | 12569717 | 4 | LOC_Os03g21964 |
| Deletion | Chr6 | 13355073 | 13355084 | 11 | |
| Deletion | Chr10 | 16193995 | 16193998 | 3 | LOC_Os10g31020 |
| Deletion | Chr9 | 16815809 | 16815816 | 7 | |
| Deletion | Chr1 | 20056978 | 20056979 | 1 | |
| Deletion | Chr11 | 20102820 | 20102825 | 5 | |
| Deletion | Chr6 | 21034880 | 21034886 | 6 | |
| Deletion | Chr1 | 21079587 | 21079609 | 22 | |
| Deletion | Chr6 | 25683201 | 25683206 | 5 | |
| Deletion | Chr5 | 29311432 | 29311433 | 1 | LOC_Os05g51070 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 1226617 | 1226618 | 2 | LOC_Os11g03290 |
| Insertion | Chr5 | 23220230 | 23220233 | 4 | |
| Insertion | Chr6 | 23545576 | 23545578 | 3 | |
| Insertion | Chr12 | 19503149 | 19503150 | 2 | |
| Insertion | Chr2 | 7930775 | 7930776 | 2 | |
| Insertion | Chr11 | 20988312 | 20988312 | 1 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 27205896 | 27513781 | LOC_Os08g43050 |
| Inversion | Chr8 | 27205937 | 27513794 | LOC_Os08g43050 |
| Inversion | Chr8 | 27286377 | 27332909 | 2 |
| Inversion | Chr3 | 33076974 | 33176777 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 3699202 | Chr4 | 9565763 | |
| Translocation | Chr4 | 23051345 | Chr3 | 5020263 |