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| Mutant Information |
|---|
| Mutant Name | FN821-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN821-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2849232 | A-G | HET | INTRON | |
| SBS | Chr10 | 1211467 | A-G | HET | INTERGENIC | |
| SBS | Chr10 | 16995701 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 10998399 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 15193859 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 14786386 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os12g25550 |
| SBS | Chr12 | 14786387 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr12 | 2183457 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 23444231 | G-A | HET | UTR_5_PRIME | |
| SBS | Chr2 | 10209925 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g17700 |
| SBS | Chr2 | 19643507 | A-C | HET | INTERGENIC | |
| SBS | Chr2 | 6071090 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os02g11760 |
| SBS | Chr2 | 7581440 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 7659468 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 2548889 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 9505685 | A-T | HET | INTERGENIC | |
| SBS | Chr4 | 35059555 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 25725083 | C-G | HET | INTERGENIC | |
| SBS | Chr6 | 26253237 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 29505563 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr7 | 23557824 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 6943716 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 16756699 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 24409730 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g38620 |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 47645 | 47684 | 39 | |
| Deletion | Chr3 | 1121864 | 1121896 | 32 | LOC_Os03g02850 |
| Deletion | Chr12 | 1327420 | 1327425 | 5 | |
| Deletion | Chr5 | 1751375 | 1837188 | 85813 | 15 |
| Deletion | Chr3 | 3200862 | 3200879 | 17 | |
| Deletion | Chr2 | 3263958 | 3263964 | 6 | LOC_Os02g06530 |
| Deletion | Chr2 | 4863308 | 4863318 | 10 | |
| Deletion | Chr7 | 5267999 | 5270312 | 2313 | |
| Deletion | Chr7 | 5715216 | 5715229 | 13 | |
| Deletion | Chr8 | 9063365 | 9063366 | 1 | |
| Deletion | Chr7 | 10155599 | 10155604 | 5 | LOC_Os07g17230 |
| Deletion | Chr8 | 10638692 | 10638693 | 1 | |
| Deletion | Chr10 | 11800604 | 11800605 | 1 | |
| Deletion | Chr10 | 18276787 | 18276798 | 11 | LOC_Os10g34240 |
| Deletion | Chr8 | 19081108 | 19081141 | 33 | |
| Deletion | Chr8 | 19947601 | 19947627 | 26 | |
| Deletion | Chr12 | 24895941 | 24895942 | 1 | |
| Deletion | Chr12 | 27491614 | 27491615 | 1 | |
| Deletion | Chr2 | 32945592 | 32945597 | 5 | |
| Deletion | Chr2 | 33642686 | 33642688 | 2 | |
| Deletion | Chr4 | 35473398 | 35473401 | 3 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 12114390 | 12114391 | 2 | |
| Insertion | Chr6 | 23543748 | 23543750 | 3 | |
| Insertion | Chr8 | 20060639 | 20060644 | 6 |
No Inversion
No Translocation