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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15582490	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g27890
SBS	Chr2	4402218	C-T	HET	INTERGENIC
SBS	Chr2	8877126	A-G	HOMO	INTERGENIC
SBS	Chr2	21360509	A-G	HOMO	INTERGENIC
SBS	Chr2	21360510	A-C	HOMO	INTERGENIC
SBS	Chr3	10281609	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g18350
SBS	Chr3	21112030	A-T	HOMO	UTR_3_PRIME
SBS	Chr3	21581220	C-T	HOMO	INTERGENIC
SBS	Chr3	21621618	C-A	HOMO	INTERGENIC
SBS	Chr3	21621622	C-A	HOMO	INTERGENIC
SBS	Chr4	15104815	C-T	HET	INTRON
SBS	Chr4	26871183	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	3333516	C-T	HOMO	INTRON
SBS	Chr5	3333525	T-C	HOMO	INTRON
SBS	Chr5	10999695	T-A	HET	INTERGENIC
SBS	Chr5	15788294	T-A	HOMO	INTERGENIC
SBS	Chr6	10673947	C-T	HOMO	INTERGENIC
SBS	Chr6	12648228	C-T	HOMO	INTERGENIC
SBS	Chr7	2254270	C-A	HET	INTRON
SBS	Chr8	1471096	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g03180
SBS	Chr9	22690282	A-T	HOMO	UTR_3_PRIME
SBS	Chr10	1868146	A-G	HOMO	INTERGENIC
SBS	Chr10	3793061	G-A	HET	INTERGENIC
SBS	Chr10	5929053	A-T	HOMO	INTERGENIC
SBS	Chr10	16915838	C-T	HET	INTERGENIC
SBS	Chr10	16915839	A-G	HET	INTERGENIC
SBS	Chr11	24643835	G-A	HET	INTRON
SBS	Chr12	5333130	C-T	HOMO	INTRON
SBS	Chr12	12441605	C-T	HET	INTERGENIC
SBS	Chr12	21942514	C-T	HET	INTERGENIC
SBS	Chr12	23063167	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g37570

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	231804	231825	21
Deletion	Chr2	1251376	1251377	1
Deletion	Chr11	2696744	2696839	95	LOC_Os11g05820
Deletion	Chr5	3606657	3615953	9296	3
Deletion	Chr7	5496369	5496386	17
Deletion	Chr9	5654596	5654598	2
Deletion	Chr4	6615001	6622000	7000
Deletion	Chr7	6670011	6670032	21
Deletion	Chr7	6750052	6750053	1
Deletion	Chr7	8141187	8141189	2	LOC_Os07g14270
Deletion	Chr3	10688692	10688697	5	LOC_Os03g19080
Deletion	Chr2	11526522	11526524	2
Deletion	Chr7	11599169	11599171	2
Deletion	Chr8	12469421	12469426	5	LOC_Os08g20770
Deletion	Chr10	16915832	16915833	1
Deletion	Chr11	17238505	17238521	16
Deletion	Chr9	17329477	17329479	2
Deletion	Chr11	18896837	18896838	1
Deletion	Chr7	21454599	21454618	19
Deletion	Chr9	22041969	22041986	17	LOC_Os09g38320
Deletion	Chr3	23811218	23811227	9
Deletion	Chr4	24179407	24179417	10
Deletion	Chr4	24354918	24354921	3	LOC_Os04g41040
Deletion	Chr3	34940785	34940810	25	LOC_Os03g61630

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	3959845	3959846	2
Insertion	Chr1	9425088	9425105	18
Insertion	Chr5	7365322	7365323	2
Insertion	Chr6	19413111	19413112	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	978350	1318271	2
Inversion	Chr4	5827861	6614959
Inversion	Chr4	5919289	6622585	LOC_Os04g12050

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9788855	Chr8	17187761	LOC_Os08g28160

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