Search Results
| Mutant Information |
|---|
| Mutant Name | FN830-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN830-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 21
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 104291 | T-C | HOMO | INTERGENIC | |
| SBS | Chr1 | 7295029 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 12496018 | T-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 27864615 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 33132968 | T-G | HOMO | INTRON | |
| SBS | Chr2 | 34656187 | T-C | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr3 | 4688686 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 28484675 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 5561858 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 5642611 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 18129262 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g30380 |
| SBS | Chr5 | 28684529 | C-A | HET | INTERGENIC | |
| SBS | Chr6 | 29840689 | T-C | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g49250 |
| SBS | Chr7 | 16656772 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g28460 |
| SBS | Chr7 | 23324725 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g38880 |
| SBS | Chr8 | 10418243 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 2578554 | C-T | HET | INTRON | |
| SBS | Chr9 | 17450520 | G-T | HET | INTERGENIC | |
| SBS | Chr9 | 17585816 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 17585817 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 12380594 | G-A | HET | INTRON |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 3178285 | 3178297 | 12 | LOC_Os01g06720 |
| Deletion | Chr9 | 4085750 | 4085751 | 1 | |
| Deletion | Chr9 | 4321647 | 4321650 | 3 | |
| Deletion | Chr7 | 4663020 | 4663024 | 4 | |
| Deletion | Chr4 | 7924001 | 7938000 | 14000 | LOC_Os04g14170 |
| Deletion | Chr12 | 8700652 | 8700653 | 1 | |
| Deletion | Chr11 | 8735631 | 8735635 | 4 | |
| Deletion | Chr4 | 10828769 | 10828788 | 19 | |
| Deletion | Chr3 | 12337117 | 12337127 | 10 | LOC_Os03g21600 |
| Deletion | Chr3 | 17089309 | 17089313 | 4 | |
| Deletion | Chr9 | 17300671 | 17300672 | 1 | |
| Deletion | Chr1 | 20397367 | 20397371 | 4 | |
| Deletion | Chr11 | 21395116 | 21395233 | 117 | |
| Deletion | Chr5 | 25324001 | 25389000 | 65000 | 12 |
| Deletion | Chr2 | 27254332 | 27254337 | 5 | |
| Deletion | Chr8 | 28135331 | 28135346 | 15 | LOC_Os08g44770 |
| Deletion | Chr2 | 28800445 | 28800448 | 3 | LOC_Os02g47170 |
| Deletion | Chr4 | 29937747 | 29937756 | 9 | LOC_Os04g50172 |
| Deletion | Chr3 | 32696022 | 32696027 | 5 | LOC_Os03g57310 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 14125174 | 14125175 | 2 | |
| Insertion | Chr1 | 22786425 | 22786433 | 9 | |
| Insertion | Chr11 | 4803269 | 4803270 | 2 | |
| Insertion | Chr5 | 18832874 | 18832875 | 2 | |
| Insertion | Chr1 | 12646686 | 12646686 | 1 | LOC_Os01g22500 |
| Insertion | Chr12 | 4105695 | 4105695 | 1 |
No Inversion
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 17546056 | Chr4 | 9601774 | |
| Translocation | Chr10 | 22015968 | Chr4 | 7886950 | LOC_Os10g41000 |
| Translocation | Chr10 | 22015996 | Chr4 | 7913535 | LOC_Os10g41000 |