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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4137965	T-C	HET	INTRON
SBS	Chr1	13997455	T-G	HOMO	INTERGENIC
SBS	Chr1	23997665	C-T	HET	INTERGENIC
SBS	Chr1	28396307	G-T	HOMO	INTERGENIC
SBS	Chr1	33779982	G-T	HOMO	INTERGENIC
SBS	Chr2	15684585	T-C	HET	INTERGENIC
SBS	Chr2	17911646	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g30150
SBS	Chr2	18390126	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr2	27088884	G-A	HOMO	INTERGENIC
SBS	Chr2	29898524	G-A	HET	INTERGENIC
SBS	Chr3	3224958	G-A	HET	INTERGENIC
SBS	Chr3	18068328	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g31640
SBS	Chr3	31093881	G-A	HET	INTERGENIC
SBS	Chr4	365812	A-G	HET	INTRON
SBS	Chr4	13194626	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	22220265	C-G	HET	INTRON
SBS	Chr5	10998093	A-C	HET	INTERGENIC
SBS	Chr6	16000489	C-T	HOMO	INTERGENIC
SBS	Chr7	7853027	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13680
SBS	Chr7	16974018	C-T	HET	INTRON
SBS	Chr8	23601	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g01030
SBS	Chr8	535422	G-A	HET	INTERGENIC
SBS	Chr8	19685117	G-A	HET	UTR_3_PRIME
SBS	Chr9	1281905	G-A	HET	INTRON
SBS	Chr9	8275376	G-A	HET	INTERGENIC
SBS	Chr10	12427593	A-G	HOMO	INTERGENIC
SBS	Chr12	4146095	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	24709332	C-A	HOMO	STOP_GAINED	LOC_Os12g39980
SBS	Chr12	24709333	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g39980

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1200815	1200826	11
Deletion	Chr9	2226104	2226105	1
Deletion	Chr12	3838001	3857000	19000	3
Deletion	Chr7	4921279	4921280	1
Deletion	Chr7	7889816	7889822	6
Deletion	Chr12	8012834	8012840	6
Deletion	Chr5	12884569	12884574	5
Deletion	Chr11	16577402	16577409	7
Deletion	Chr11	19155513	19155518	5
Deletion	Chr4	19615329	19615338	9	LOC_Os04g32590
Deletion	Chr6	23172762	23172764	2	LOC_Os06g39030
Deletion	Chr3	23287544	23287547	3
Deletion	Chr7	24159318	24159319	1
Deletion	Chr11	28940001	28965000	25000	6
Deletion	Chr1	30220469	30220473	4	LOC_Os01g52560
Deletion	Chr3	31093378	31093387	9
Deletion	Chr1	35587001	35727000	140000	24
Deletion	Chr3	35897273	35897274	1	LOC_Os03g63550

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	28048756	28048799	44
Insertion	Chr6	4418162	4418170	9
Insertion	Chr1	2961170	2961175	6
Insertion	Chr2	29365387	29365389	3	LOC_Os02g47980
Insertion	Chr10	18961710	18961711	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2187234	2222264
Inversion	Chr1	2931475	4485457	LOC_Os01g06150
Inversion	Chr1	2931502	4485466	LOC_Os01g06150

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	27344077	Chr11	28939299	2

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