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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29709421	C-A	HET	INTERGENIC
SBS	Chr10	19750807	C-T	HET	INTERGENIC
SBS	Chr10	9516453	G-C	HET	INTERGENIC
SBS	Chr11	13781608	C-T	HET	INTRON
SBS	Chr11	688273	G-T	HET	INTERGENIC
SBS	Chr12	11115435	G-C	HET	INTERGENIC
SBS	Chr2	14400463	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	21360043	C-T	HET	INTERGENIC
SBS	Chr2	34729553	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56640
SBS	Chr3	30369136	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g52940
SBS	Chr4	26441920	T-A	HOMO	INTERGENIC
SBS	Chr4	8986434	A-G	HOMO	INTRON
SBS	Chr5	29323744	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51110
SBS	Chr5	4791147	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	1257364	C-T	HET	INTRON
SBS	Chr6	1534059	G-A	HOMO	INTERGENIC
SBS	Chr6	25390942	A-G	HET	INTRON
SBS	Chr7	8576953	A-T	HET	INTERGENIC
SBS	Chr8	12303498	G-T	HOMO	INTERGENIC
SBS	Chr9	10793036	C-T	HOMO	INTRON
SBS	Chr9	4651459	C-T	HET	INTRON

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1093083	1093090	7
Deletion	Chr1	2609868	2609870	2	LOC_Os01g05500
Deletion	Chr12	2926659	2926660	1
Deletion	Chr9	3706030	3706052	22
Deletion	Chr4	9847185	9847187	2	LOC_Os04g17900
Deletion	Chr3	10142695	10142704	9
Deletion	Chr12	11378917	11378920	3
Deletion	Chr2	12641278	12641282	4
Deletion	Chr4	16652190	16652195	5	LOC_Os04g28190
Deletion	Chr10	16700799	16700804	5
Deletion	Chr10	17071981	17071995	14	LOC_Os10g32580
Deletion	Chr4	18650031	18650043	12
Deletion	Chr4	19934220	19962725	28505	2
Deletion	Chr11	21927577	21927584	7
Deletion	Chr2	22217947	22427923	209976	24
Deletion	Chr6	24380057	24380059	2
Deletion	Chr6	25004680	25004685	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	11334810	11334814	5
Insertion	Chr8	12253595	12253595	1
Insertion	Chr8	3392974	3392975	2

No Inversion

No Translocation

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