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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	75760	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	16159343	C-T	HET	INTERGENIC
SBS	Chr1	25369840	C-T	HET	INTRON
SBS	Chr2	4523070	A-G	HOMO	INTERGENIC
SBS	Chr2	4831052	T-A	HET	INTERGENIC
SBS	Chr2	6362754	T-C	HET	INTERGENIC
SBS	Chr2	26722284	G-A	HET	INTERGENIC
SBS	Chr3	923696	G-A	HOMO	INTRON
SBS	Chr3	23552634	C-T	HET	INTERGENIC
SBS	Chr4	9529891	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g17410
SBS	Chr4	9529901	C-T	HET	START_LOST	LOC_Os04g17410
SBS	Chr4	10227818	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18500
SBS	Chr4	10227819	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g18500
SBS	Chr4	18507407	T-C	HOMO	INTRON
SBS	Chr4	19609452	T-C	HET	INTERGENIC
SBS	Chr4	35432068	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g59580
SBS	Chr5	17247020	T-A	HOMO	UTR_5_PRIME
SBS	Chr5	20332664	C-A	HOMO	INTERGENIC
SBS	Chr5	20332665	C-A	HOMO	INTERGENIC
SBS	Chr6	3106790	A-T	HET	INTRON
SBS	Chr6	13953763	C-A	HET	INTERGENIC
SBS	Chr6	22677815	C-T	HET	INTERGENIC
SBS	Chr6	30106703	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g49760
SBS	Chr7	847522	A-G	HET	INTERGENIC
SBS	Chr7	8716231	A-G	HOMO	INTERGENIC
SBS	Chr7	9848662	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g16780
SBS	Chr7	16449294	G-T	HET	INTRON
SBS	Chr7	17456966	G-A	HET	INTERGENIC
SBS	Chr7	28706966	T-A	HOMO	INTERGENIC
SBS	Chr8	8362249	T-C	HOMO	INTERGENIC
SBS	Chr8	8511492	G-A	HOMO	INTRON
SBS	Chr8	13024832	G-C	HET	INTERGENIC
SBS	Chr10	9278307	T-C	HOMO	STOP_LOST	LOC_Os10g18260
SBS	Chr10	13236626	C-A	HET	INTRON
SBS	Chr10	15832131	G-A	HOMO	INTERGENIC
SBS	Chr11	3358717	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	17089363	T-C	HOMO	INTERGENIC
SBS	Chr11	17229967	C-T	HOMO	UTR_5_PRIME

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	600102	600114	12	LOC_Os09g01890
Deletion	Chr9	2390628	2390692	64
Deletion	Chr9	4345701	4345706	5	LOC_Os09g08370
Deletion	Chr2	4355853	4355855	2
Deletion	Chr2	4460001	4563000	103000	9
Deletion	Chr1	4904542	4904572	30
Deletion	Chr3	5074848	5074849	1
Deletion	Chr1	7736439	7736441	2
Deletion	Chr7	8857001	8857002	1
Deletion	Chr10	9277829	9277833	4
Deletion	Chr5	12277945	12277946	1
Deletion	Chr9	15195463	15195475	12
Deletion	Chr7	17882489	17882490	1
Deletion	Chr12	20291079	20291081	2
Deletion	Chr3	23881873	23881886	13
Deletion	Chr5	26255834	26255835	1
Deletion	Chr5	26275751	26275754	3
Deletion	Chr7	26711558	26711577	19
Deletion	Chr3	27509458	27509472	14
Deletion	Chr4	28462185	28462203	18
Deletion	Chr1	33632685	33632696	11
Deletion	Chr3	33901846	33901864	18
Deletion	Chr4	35009033	35009050	17

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	5336096	5336097	2
Insertion	Chr12	20711488	20711489	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	14424279	14754108	2
Inversion	Chr12	19673921	26343314	LOC_Os12g32600

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	21059206	Chr2	690931	LOC_Os02g02210
Translocation	Chr7	26937068	Chr5	14654924	LOC_Os07g45120

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