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Mutant Information

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24928219	C-T	HET	INTERGENIC
SBS	Chr1	28886204	T-C	HET	INTRON
SBS	Chr1	41529439	A-G	HET	SYNONYMOUS_CODING
SBS	Chr10	13505826	T-C	HET	INTERGENIC
SBS	Chr10	21998912	T-A	HOMO	INTERGENIC
SBS	Chr10	5208843	T-A	HOMO	INTERGENIC
SBS	Chr10	5720627	C-G	HET	INTERGENIC
SBS	Chr11	15167928	A-C	HET	INTERGENIC
SBS	Chr11	5848251	C-T	HOMO	INTERGENIC
SBS	Chr11	778173	C-T	HET	INTERGENIC
SBS	Chr12	14102713	G-T	HOMO	INTERGENIC
SBS	Chr12	14383284	G-A	HOMO	INTRON
SBS	Chr12	26562552	T-A	HET	INTERGENIC
SBS	Chr2	15013716	A-T	HET	INTERGENIC
SBS	Chr2	34168419	C-A	HOMO	INTERGENIC
SBS	Chr3	151486	G-C	HOMO	INTERGENIC
SBS	Chr3	16088116	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	21449462	T-C	HOMO	INTERGENIC
SBS	Chr3	25521056	G-A	HOMO	INTRON
SBS	Chr3	26663936	A-G	HOMO	INTERGENIC
SBS	Chr3	30215260	T-C	HET	INTERGENIC
SBS	Chr3	35710018	T-C	HET	INTRON
SBS	Chr4	12117622	G-T	HET	INTERGENIC
SBS	Chr4	19410072	A-G	HET	INTERGENIC
SBS	Chr4	20370104	G-A	HOMO	INTERGENIC
SBS	Chr4	8106489	C-T	HET	INTERGENIC
SBS	Chr5	12122345	C-T	HOMO	INTERGENIC
SBS	Chr5	18767926	G-A	HET	INTERGENIC
SBS	Chr5	24137532	T-C	HET	INTERGENIC
SBS	Chr6	2908679	G-A	HET	INTRON
SBS	Chr6	6959951	C-T	HOMO	INTERGENIC
SBS	Chr7	1123505	A-G	HET	INTERGENIC
SBS	Chr7	11598160	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g19570
SBS	Chr7	14472131	T-A	HOMO	UTR_5_PRIME
SBS	Chr7	26287359	A-T	HET	INTERGENIC
SBS	Chr7	3651175	G-A	HOMO	INTRON
SBS	Chr8	12915399	G-T	HET	INTERGENIC
SBS	Chr8	4035444	A-G	HET	INTERGENIC
SBS	Chr8	8265829	G-A	HET	INTERGENIC
SBS	Chr8	9191549	C-T	HET	INTERGENIC
SBS	Chr8	9968153	C-A	HET	SYNONYMOUS_CODING
SBS	Chr9	11483164	C-A	HET	INTERGENIC
SBS	Chr9	18006589	T-C	HET	INTRON
SBS	Chr9	5317800	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g09810

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	377316	377317	1	LOC_Os01g01710
Deletion	Chr11	2397379	2397394	15
Deletion	Chr1	5650001	5736000	86000	12
Deletion	Chr11	7264679	7264680	1
Deletion	Chr4	10450671	10450694	23
Deletion	Chr7	11569604	11569608	4
Deletion	Chr7	11903478	11903487	9	LOC_Os07g20590
Deletion	Chr11	14049829	14049848	19
Deletion	Chr10	14227566	14227573	7
Deletion	Chr12	16922297	16922302	5
Deletion	Chr6	17589720	17589721	1	LOC_Os06g30440
Deletion	Chr9	18166234	18166241	7
Deletion	Chr4	20933866	20933910	44
Deletion	Chr1	21041643	21041652	9
Deletion	Chr8	21721477	21721479	2
Deletion	Chr4	23175878	23175880	2	LOC_Os04g39020
Deletion	Chr4	25770805	25770811	6
Deletion	Chr6	27019146	27019147	1
Deletion	Chr5	27810379	27810393	14
Deletion	Chr7	29033481	29033482	1
Deletion	Chr5	29552125	29552126	1
Deletion	Chr1	34903021	34903028	7

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15096802	15096802	1
Insertion	Chr11	23843690	23843690	1
Insertion	Chr3	14316094	14316095	2	LOC_Os03g25070
Insertion	Chr7	5268745	5268746	2
Insertion	Chr8	3347906	3347907	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	19964642	20284377	LOC_Os04g33530
Inversion	Chr4	19964653	20284375	LOC_Os04g33530

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	11416701	Chr5	3531246
Translocation	Chr6	11416791	Chr5	3532826	2

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