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| Mutant Information |
|---|
| Mutant Name | FN838-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN838-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1873389 | C-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 23275793 | C-A | HOMO | INTRON | |
| SBS | Chr10 | 21566438 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 5153879 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 5153880 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 8504306 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr10 | 8526510 | G-T | HET | INTERGENIC | |
| SBS | Chr11 | 18844027 | G-T | HET | INTERGENIC | |
| SBS | Chr12 | 19280849 | A-C | HET | INTRON | |
| SBS | Chr12 | 2766487 | T-C | HET | INTERGENIC | |
| SBS | Chr12 | 3337177 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 3977659 | C-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 8241430 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 20255043 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 26647246 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 3983816 | C-A | HET | INTERGENIC | |
| SBS | Chr3 | 11419083 | C-T | HOMO | STOP_GAINED | LOC_Os03g20200 |
| SBS | Chr3 | 12742718 | C-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 19126032 | G-A | HOMO | INTERGENIC | |
| SBS | Chr4 | 10051991 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 17173761 | G-A | HET | INTRON | |
| SBS | Chr4 | 2671771 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 29870374 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 32263389 | G-T | HOMO | INTERGENIC | |
| SBS | Chr5 | 4292621 | T-C | HOMO | INTRON | |
| SBS | Chr6 | 26170414 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 2307595 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 7126827 | G-T | HET | INTERGENIC | |
| SBS | Chr8 | 20537445 | T-C | HET | INTERGENIC |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 4465001 | 4480000 | 15000 | LOC_Os04g08370 |
| Deletion | Chr12 | 5260327 | 5260328 | 1 | |
| Deletion | Chr7 | 11888694 | 11888700 | 6 | |
| Deletion | Chr8 | 12746426 | 12746450 | 24 | |
| Deletion | Chr5 | 15995764 | 15995793 | 29 | |
| Deletion | Chr12 | 16962467 | 16962485 | 18 | |
| Deletion | Chr3 | 19522277 | 19522278 | 1 | |
| Deletion | Chr1 | 21127249 | 21127251 | 2 | |
| Deletion | Chr4 | 21647023 | 21647024 | 1 | |
| Deletion | Chr2 | 25937001 | 25976000 | 39000 | 7 |
| Deletion | Chr4 | 32814091 | 32814104 | 13 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 23551114 | 23551115 | 2 | |
| Insertion | Chr12 | 4422403 | 4422415 | 13 | |
| Insertion | Chr5 | 16375533 | 16375534 | 2 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 8800730 | 9017535 | |
| Inversion | Chr1 | 8800990 | 9017544 | |
| Inversion | Chr12 | 17958586 | 23372041 | 2 |
| Inversion | Chr12 | 17958597 | 23372056 | 2 |
No Translocation