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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15385701	A-G	HET	INTERGENIC
SBS	Chr1	29344350	G-C	HET	INTERGENIC
SBS	Chr1	30363536	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g52770
SBS	Chr1	37613230	C-T	HET	INTERGENIC
SBS	Chr10	14283324	A-T	HET	INTERGENIC
SBS	Chr11	16018122	A-G	HOMO	INTERGENIC
SBS	Chr11	24711510	G-A	HET	INTERGENIC
SBS	Chr11	5623187	A-G	HOMO	INTERGENIC
SBS	Chr12	16403512	C-T	HET	INTERGENIC
SBS	Chr12	4141829	T-C	HET	INTERGENIC
SBS	Chr2	14720712	G-A	HET	INTERGENIC
SBS	Chr2	217496	G-A	HET	INTERGENIC
SBS	Chr2	32795789	T-G	HOMO	INTRON
SBS	Chr3	23198092	T-G	HET	INTRON
SBS	Chr3	7944961	T-C	HOMO	INTERGENIC
SBS	Chr4	12538241	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22120
SBS	Chr4	13696780	C-T	HOMO	INTERGENIC
SBS	Chr4	18116813	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	8902758	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	23906657	A-C	HET	INTERGENIC
SBS	Chr5	9847410	C-T	HOMO	INTERGENIC
SBS	Chr6	14631535	G-A	HET	INTERGENIC
SBS	Chr6	16917794	T-A	HET	INTERGENIC
SBS	Chr6	30991272	G-A	HET	INTERGENIC
SBS	Chr6	30991273	T-A	HET	INTERGENIC
SBS	Chr7	24505632	A-T	HET	INTRON
SBS	Chr7	7323837	T-G	HOMO	INTERGENIC
SBS	Chr7	9855101	C-T	HET	INTERGENIC
SBS	Chr7	9855108	G-A	HET	INTERGENIC
SBS	Chr8	2454126	A-G	HET	SYNONYMOUS_CODING
SBS	Chr8	5283258	T-C	HOMO	INTERGENIC
SBS	Chr8	6430243	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr9	18678006	C-A	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	143990	144010	20
Deletion	Chr8	1107609	1107610	1
Deletion	Chr2	3389982	3389988	6
Deletion	Chr1	3507860	3507877	17	LOC_Os01g07400
Deletion	Chr4	3553012	3553031	19
Deletion	Chr11	4399682	4399683	1
Deletion	Chr3	5150127	5150141	14
Deletion	Chr9	8626752	8626753	1
Deletion	Chr11	11790133	11790140	7
Deletion	Chr5	12150390	12150396	6
Deletion	Chr11	14992007	14992008	1
Deletion	Chr2	15488992	15489002	10
Deletion	Chr4	15906958	15906961	3
Deletion	Chr6	16314854	16314856	2
Deletion	Chr11	17672807	17672810	3
Deletion	Chr3	19388426	19388435	9
Deletion	Chr8	20747238	20747255	17
Deletion	Chr5	21084757	21084770	13
Deletion	Chr1	21158456	21158467	11
Deletion	Chr11	21686228	21686231	3
Deletion	Chr1	21795897	21795902	5
Deletion	Chr2	23120556	23121178	622	LOC_Os02g38230
Deletion	Chr1	28334070	28334076	6
Deletion	Chr2	29668518	29668541	23
Deletion	Chr5	29715425	29715428	3
Deletion	Chr6	30907675	30907684	9	LOC_Os06g51100
Deletion	Chr2	33369756	33369763	7
Deletion	Chr1	41867245	41867252	7
Deletion	Chr1	43049198	43049200	2	LOC_Os01g74310
Deletion	Chr1	43112503	43112506	3

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4952692	4952722	31
Insertion	Chr4	32200739	32200740	2
Insertion	Chr5	311092	311093	2	LOC_Os05g01520
Insertion	Chr6	6978928	6978928	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	1429916	3852666
Inversion	Chr7	12458338	13759973
Inversion	Chr2	14346185	15732390	2
Inversion	Chr2	15413273	15732377	LOC_Os02g26800
Inversion	Chr1	39210337	39271882	LOC_Os01g67570
Inversion	Chr1	39210673	39271890	LOC_Os01g67570

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1125926	Chr2	21870541
Translocation	Chr6	7980185	Chr1	39210666	LOC_Os06g14300
Translocation	Chr6	7980212	Chr1	39210344	LOC_Os06g14300

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