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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12713104	C-G	HOMO	INTERGENIC
SBS	Chr1	4395420	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	16301090	T-A	HOMO	INTERGENIC
SBS	Chr11	2097945	A-T	HET	INTRON
SBS	Chr11	27192193	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44920
SBS	Chr11	6432397	C-G	HET	INTERGENIC
SBS	Chr2	13386087	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g22410
SBS	Chr2	16030750	C-G	HET	INTERGENIC
SBS	Chr2	29401877	G-C	HET	INTERGENIC
SBS	Chr2	33577907	G-A	HET	INTERGENIC
SBS	Chr2	34985101	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g57120
SBS	Chr3	10751825	A-T	HET	INTERGENIC
SBS	Chr3	14273179	C-T	HET	INTERGENIC
SBS	Chr3	20088799	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36220
SBS	Chr3	2679817	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g05420
SBS	Chr3	32901516	T-C	HET	INTERGENIC
SBS	Chr3	4617233	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g08920
SBS	Chr4	1528263	C-T	HOMO	INTERGENIC
SBS	Chr4	33424153	A-C	HET	INTERGENIC
SBS	Chr5	17608965	G-A	HOMO	INTRON
SBS	Chr5	26015142	C-A	HOMO	INTERGENIC
SBS	Chr5	6387073	C-T	HET	INTERGENIC
SBS	Chr7	20841954	C-T	HOMO	INTERGENIC
SBS	Chr7	22704614	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g37860
SBS	Chr7	23590777	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g39380
SBS	Chr7	9197305	A-C	HET	INTERGENIC
SBS	Chr8	13262546	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g22028
SBS	Chr9	14633705	C-T	HOMO	INTERGENIC
SBS	Chr9	19310112	C-T	HET	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	437622	437635	13
Deletion	Chr9	627650	627651	1
Deletion	Chr4	2466343	2466344	1
Deletion	Chr7	3848497	3848509	12
Deletion	Chr12	4145961	4145962	1	LOC_Os12g08130
Deletion	Chr11	4868474	4868476	2	LOC_Os11g09140
Deletion	Chr1	5213195	5213203	8	LOC_Os01g10000
Deletion	Chr7	8554015	8554016	1
Deletion	Chr9	9433281	9433287	6
Deletion	Chr3	9455088	9455089	1	LOC_Os03g17020
Deletion	Chr7	9820080	9820085	5
Deletion	Chr1	14394822	14394841	19
Deletion	Chr7	14588553	14588577	24
Deletion	Chr6	15389296	15389302	6	LOC_Os06g26280
Deletion	Chr12	17416818	17416819	1	LOC_Os12g29350
Deletion	Chr5	17607312	17607327	15	LOC_Os05g30380
Deletion	Chr12	18366456	18366460	4
Deletion	Chr1	19108592	19108595	3
Deletion	Chr3	19664314	19664317	3
Deletion	Chr2	22444295	22444298	3
Deletion	Chr7	22703413	22703423	10
Deletion	Chr9	22777681	22777701	20
Deletion	Chr6	24480749	24480750	1
Deletion	Chr3	27192982	27192991	9
Deletion	Chr3	28889005	28889006	1
Deletion	Chr1	29244613	29244617	4
Deletion	Chr3	29653076	29653082	6
Deletion	Chr4	33999704	33999705	1
Deletion	Chr2	35847484	35847485	1
Deletion	Chr1	41506801	41506802	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	6051807	6051807	1
Insertion	Chr3	21100816	21100816	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7747011	16310219
Inversion	Chr7	7747029	16310222
Inversion	Chr2	10042790	10501537	LOC_Os02g17460

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4416693	Chr8	18415253	LOC_Os08g29980
Translocation	Chr9	4638141	Chr5	14581433	LOC_Os09g08790
Translocation	Chr9	22821263	Chr1	6563239
Translocation	Chr12	25027407	Chr6	10152186	2

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