Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26631965	A-G	HET	INTRON
SBS	Chr1	37939818	G-T	HET	INTERGENIC
SBS	Chr10	19886882	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g37170
SBS	Chr10	22442862	C-T	HET	INTERGENIC
SBS	Chr10	2333817	T-G	HET	INTERGENIC
SBS	Chr10	8463411	T-A	HET	INTRON
SBS	Chr11	17719146	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g30470
SBS	Chr11	28092565	G-A	HET	INTERGENIC
SBS	Chr11	3319195	C-T	HET	INTERGENIC
SBS	Chr12	16848498	C-A	HOMO	INTERGENIC
SBS	Chr12	9741915	C-G	HOMO	INTERGENIC
SBS	Chr2	26190253	C-T	HET	INTERGENIC
SBS	Chr2	27682714	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g45510
SBS	Chr2	7420143	T-A	HOMO	INTERGENIC
SBS	Chr2	8764891	C-A	HET	INTRON
SBS	Chr4	13564858	G-A	HET	INTERGENIC
SBS	Chr4	2885683	A-G	HET	INTERGENIC
SBS	Chr4	6369580	G-A	HET	INTERGENIC
SBS	Chr5	15875032	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g27320
SBS	Chr5	18171795	A-G	HOMO	INTRON
SBS	Chr6	11345236	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g19854
SBS	Chr6	29946079	G-A	HOMO	INTRON
SBS	Chr7	23199474	T-C	HET	INTERGENIC
SBS	Chr8	4397174	T-A	HET	INTRON
SBS	Chr8	8086870	A-C	HET	INTERGENIC
SBS	Chr9	13005498	T-G	HOMO	INTERGENIC
SBS	Chr9	4252383	C-G	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1511325	1511342	17
Deletion	Chr6	5698001	5795000	97000	14
Deletion	Chr6	8323006	8323007	1
Deletion	Chr6	8937132	8938886	1754	LOC_Os06g15750
Deletion	Chr9	9490858	9490861	3
Deletion	Chr3	9493509	9493510	1
Deletion	Chr2	12884581	12884589	8
Deletion	Chr10	14469834	14469842	8
Deletion	Chr11	20680240	20680254	14
Deletion	Chr6	21785069	21785075	6
Deletion	Chr12	23565114	23565115	1
Deletion	Chr7	24289808	24289812	4
Deletion	Chr3	25000312	25000328	16
Deletion	Chr8	26620602	26620604	2
Deletion	Chr1	36538993	36539052	59
Deletion	Chr1	37404001	37600000	196000	36
Deletion	Chr1	40329269	40329276	7

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	16046577	16046577	1
Insertion	Chr8	18443067	18443070	4

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	5633353	5794492	LOC_Os04g10390
Inversion	Chr5	6561595	8463292
Inversion	Chr4	18807169	19303415
Inversion	Chr4	18807180	19303430
Inversion	Chr4	21762961	22064650	LOC_Os04g35710
Inversion	Chr4	21762995	22064658	LOC_Os04g35710
Inversion	Chr1	37303574	38983231	2
Inversion	Chr1	37403616	38983038	2

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	8526979	Chr1	28382312
Translocation	Chr6	8937135	Chr4	5633849	2
Translocation	Chr6	8938885	Chr4	5794491	LOC_Os06g15750

Main menu