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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16745434	C-T	HET	INTERGENIC
SBS	Chr1	21373863	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g38160
SBS	Chr1	29129914	G-T	HET	INTERGENIC
SBS	Chr1	32946446	T-G	HET	INTERGENIC
SBS	Chr2	3032155	G-A	HET	INTERGENIC
SBS	Chr2	23710670	C-G	HOMO	INTERGENIC
SBS	Chr2	31302578	T-A	HOMO	INTERGENIC
SBS	Chr2	31302581	G-T	HOMO	INTERGENIC
SBS	Chr3	23623993	G-A	HOMO	UTR_3_PRIME
SBS	Chr3	23623994	G-A	HOMO	UTR_3_PRIME
SBS	Chr3	25902879	C-T	HET	INTERGENIC
SBS	Chr3	27511169	T-C	HOMO	INTRON
SBS	Chr4	541211	A-T	HET	INTERGENIC
SBS	Chr4	719119	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g02150
SBS	Chr4	8340209	A-G	HET	INTERGENIC
SBS	Chr4	17676636	G-A	HET	INTERGENIC
SBS	Chr4	19458556	G-A	HET	INTERGENIC
SBS	Chr5	8414287	C-T	HET	INTRON
SBS	Chr5	15370221	C-T	HOMO	INTERGENIC
SBS	Chr5	16722876	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g28540
SBS	Chr5	17602417	T-A	HET	INTERGENIC
SBS	Chr5	28019004	A-G	HOMO	INTERGENIC
SBS	Chr6	96471	T-A	HOMO	INTERGENIC
SBS	Chr6	96472	G-T	HOMO	INTERGENIC
SBS	Chr6	24778590	G-T	HOMO	INTERGENIC
SBS	Chr6	25723779	C-T	HOMO	INTERGENIC
SBS	Chr7	2045343	T-A	HET	INTERGENIC
SBS	Chr8	7448841	A-G	HET	INTERGENIC
SBS	Chr9	13889881	G-C	HET	SYNONYMOUS_CODING
SBS	Chr9	17617863	C-T	HET	INTRON
SBS	Chr10	9411195	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	512589	C-T	HET	INTERGENIC
SBS	Chr11	1125970	A-T	HET	INTERGENIC
SBS	Chr11	21605394	A-G	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	183843	183852	9
Deletion	Chr8	1093849	1093863	14
Deletion	Chr10	3252467	3252469	2
Deletion	Chr4	4903774	4903775	1
Deletion	Chr6	6567255	6567269	14
Deletion	Chr2	8886501	8886502	1
Deletion	Chr4	10973347	10973349	2
Deletion	Chr10	11248113	11248118	5	LOC_Os10g21880
Deletion	Chr9	11470890	11470897	7
Deletion	Chr6	15685376	15851794	166418	24
Deletion	Chr12	19335135	19335148	13
Deletion	Chr6	19678047	19678084	37
Deletion	Chr1	20019001	20109000	90000	7
Deletion	Chr2	20808745	20808997	252
Deletion	Chr9	21356991	21367026	10035	2
Deletion	Chr11	21742053	21742054	1	LOC_Os11g36860
Deletion	Chr3	23676576	23676580	4
Deletion	Chr7	24762432	24762437	5
Deletion	Chr6	24902672	24902685	13	LOC_Os06g41540
Deletion	Chr5	25148708	25153094	4386
Deletion	Chr4	27830371	27830372	1
Deletion	Chr4	27830378	27830379	1
Deletion	Chr7	28459936	28459937	1
Deletion	Chr4	29977513	29977519	6	LOC_Os04g50216
Deletion	Chr2	32107900	32107915	15

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	32038323	32038323	1	LOC_Os01g55610
Insertion	Chr1	8938808	8938810	3
Insertion	Chr1	33348704	33348706	3
Insertion	Chr1	42459782	42459783	2
Insertion	Chr11	12653359	12653360	2
Insertion	Chr8	16701441	16701442	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7022569	14162865
Inversion	Chr1	18806662	20109325	LOC_Os01g34140
Inversion	Chr5	26485209	27336752	LOC_Os05g47710

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	15685383	Chr3	9866311	2
Translocation	Chr6	15851792	Chr3	9866304	2

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