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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	HET	INTRON
SBS	Chr1	21428496	C-G	HOMO	INTRON
SBS	Chr1	35190609	G-A	HOMO	INTERGENIC
SBS	Chr1	39809283	C-A	HOMO	INTERGENIC
SBS	Chr1	6572858	A-T	HET	INTRON
SBS	Chr10	21862843	T-C	HET	INTERGENIC
SBS	Chr11	17613688	G-A	HOMO	INTERGENIC
SBS	Chr11	5299094	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g09900
SBS	Chr12	24883047	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	27276729	T-C	HET	UTR_5_PRIME
SBS	Chr12	27276732	C-A	HET	UTR_5_PRIME
SBS	Chr12	4845945	G-A	HET	INTERGENIC
SBS	Chr12	7271488	T-C	HET	INTERGENIC
SBS	Chr2	21109547	C-G	HOMO	INTERGENIC
SBS	Chr3	16773623	G-A	HET	INTRON
SBS	Chr3	22536250	C-T	HOMO	INTERGENIC
SBS	Chr3	34016613	T-G	HET	INTERGENIC
SBS	Chr3	7537612	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g13900
SBS	Chr4	18391879	T-C	HET	INTERGENIC
SBS	Chr4	21046542	C-A	HET	INTERGENIC
SBS	Chr4	23414184	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	4655704	G-A	HET	INTERGENIC
SBS	Chr5	18899674	G-A	HET	INTRON
SBS	Chr5	21140974	G-A	HET	INTERGENIC
SBS	Chr5	24444068	A-T	HET	UTR_3_PRIME
SBS	Chr5	5444859	G-A	HET	UTR_3_PRIME
SBS	Chr6	7797539	G-C	HET	INTERGENIC
SBS	Chr7	16123567	G-A	HET	INTERGENIC
SBS	Chr7	27504762	C-T	HET	INTRON
SBS	Chr7	28201663	G-A	HET	INTERGENIC
SBS	Chr8	11290576	C-T	HET	INTERGENIC
SBS	Chr8	13769139	T-A	HET	INTERGENIC
SBS	Chr8	16174340	C-G	HET	INTERGENIC
SBS	Chr9	11334504	C-T	HET	SYNONYMOUS_CODING

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	147290	147314	24
Deletion	Chr11	1087318	1087328	10	LOC_Os11g03070
Deletion	Chr8	2374971	2374985	14
Deletion	Chr11	2877141	2877143	2
Deletion	Chr5	2923989	2924000	11
Deletion	Chr6	5574035	5574047	12
Deletion	Chr5	6254401	6254407	6
Deletion	Chr1	7924753	7924764	11	LOC_Os01g14120
Deletion	Chr10	11614900	11614901	1
Deletion	Chr2	11644663	11644664	1
Deletion	Chr9	13666899	13666900	1	LOC_Os09g23110
Deletion	Chr12	15527284	15527285	1
Deletion	Chr7	15646355	15646356	1
Deletion	Chr2	16582001	16592000	10000	2
Deletion	Chr9	16825431	16825432	1	LOC_Os09g27650
Deletion	Chr9	20466592	20466597	5
Deletion	Chr1	20957092	20957109	17
Deletion	Chr8	21935703	21935706	3
Deletion	Chr1	23337028	23337029	1	LOC_Os01g41220
Deletion	Chr5	25742118	25747011	4893	LOC_Os05g44250
Deletion	Chr6	25786630	25786632	2	LOC_Os06g42910
Deletion	Chr8	26098199	26426595	328396	50
Deletion	Chr3	34987532	34987937	405
Deletion	Chr1	35127346	35127350	4
Deletion	Chr1	39197105	39197112	7
Deletion	Chr1	39709855	39710924	1069	LOC_Os01g68340
Deletion	Chr1	40572961	40572963	2	LOC_Os01g70110

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25992501	25992501	1
Insertion	Chr12	11242521	11242525	5
Insertion	Chr6	25246934	25246935	2
Insertion	Chr6	8325747	8325748	2
Insertion	Chr6	8413782	8413782	1
Insertion	Chr9	10407045	10407046	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7572652	7621122	2
Inversion	Chr1	7577335	7621122	LOC_Os01g13610
Inversion	Chr5	13959699	20573839
Inversion	Chr1	19971917	35935329
Inversion	Chr1	19979703	35935316
Inversion	Chr2	20858199	21102619	2
Inversion	Chr11	26420799	26810428	2
Inversion	Chr11	26810441	26938172	LOC_Os11g44350

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11452205	Chr1	39710093
Translocation	Chr12	13878878	Chr11	26424908
Translocation	Chr12	13878884	Chr11	26420813	LOC_Os11g43750

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