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| Mutant Information |
|---|
| Mutant Name | FN854-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN854-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 33
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18789871 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 9331679 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 12604490 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g24560 |
| SBS | Chr10 | 1974672 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g04240 |
| SBS | Chr10 | 4015204 | T-G | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 24732329 | A-C | HET | INTERGENIC | |
| SBS | Chr11 | 25127601 | T-A | HET | INTERGENIC | |
| SBS | Chr11 | 4750274 | A-G | HOMO | INTERGENIC | |
| SBS | Chr12 | 4696359 | G-A | HET | INTRON | |
| SBS | Chr3 | 15029788 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os03g26280 |
| SBS | Chr3 | 19806481 | A-G | HOMO | INTERGENIC | |
| SBS | Chr3 | 20789917 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 27517358 | G-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 3064147 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 10329247 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 22087976 | C-A | HOMO | INTRON | |
| SBS | Chr4 | 26507681 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr6 | 10865819 | T-A | HET | INTRON | |
| SBS | Chr6 | 10891931 | G-C | HET | INTERGENIC | |
| SBS | Chr6 | 994243 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 9977294 | A-T | HET | INTERGENIC | |
| SBS | Chr7 | 28722525 | G-A | HET | INTERGENIC | |
| SBS | Chr7 | 376764 | C-T | HET | INTRON | |
| SBS | Chr7 | 6449693 | G-T | HET | INTERGENIC | |
| SBS | Chr7 | 6478467 | C-A | HET | INTERGENIC | |
| SBS | Chr8 | 17261022 | T-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 9608438 | C-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 15999346 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 16306285 | T-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 20153101 | T-A | HOMO | INTRON | |
| SBS | Chr9 | 20153102 | C-A | HOMO | INTRON | |
| SBS | Chr9 | 21408784 | A-C | HOMO | INTERGENIC | |
| SBS | Chr9 | 2346723 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g04420 |
Deletions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 3136001 | 3172000 | 36000 | 6 |
| Deletion | Chr5 | 4093636 | 4093637 | 1 | LOC_Os05g07626 |
| Deletion | Chr9 | 16256868 | 16256869 | 1 | LOC_Os09g26760 |
| Deletion | Chr8 | 17261000 | 17261010 | 10 | |
| Deletion | Chr9 | 20153077 | 20153090 | 13 |
No Insertion
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 18859785 | 32678197 | LOC_Os03g57290 |
| Inversion | Chr3 | 18859796 | 32676163 | LOC_Os03g57290 |
| Inversion | Chr2 | 20304392 | 20319366 |
No Translocation