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Mutant Information

Mutant Name	FN855-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN855-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1263852	G-A	HOMO	INTERGENIC
SBS	Chr1	812995	G-T	HOMO	INTERGENIC
SBS	Chr10	2474153	C-T	HET	INTERGENIC
SBS	Chr11	28522115	T-A	HOMO	INTERGENIC
SBS	Chr12	17789447	C-A	HET	INTRON
SBS	Chr12	24709661	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g39980
SBS	Chr2	26572083	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g44000
SBS	Chr2	7700884	G-A	HOMO	INTERGENIC
SBS	Chr3	28387747	C-T	HET	INTERGENIC
SBS	Chr4	1605980	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	21925295	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	6519464	T-A	HET	INTERGENIC
SBS	Chr6	20296464	C-T	HOMO	INTERGENIC
SBS	Chr8	7465806	C-T	HOMO	INTERGENIC
SBS	Chr9	13422829	C-T	HET	INTERGENIC
SBS	Chr9	14594674	G-T	HET	INTERGENIC

Deletions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	5990313	5990315	2
Deletion	Chr2	7274382	7274386	4
Deletion	Chr1	18062638	18062642	4	LOC_Os01g32890
Deletion	Chr11	20379699	20379700	1
Deletion	Chr11	26538598	26538603	5
Deletion	Chr4	29028742	29028743	1

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	22399037	22399038	2

No Inversion

No Translocation