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Mutant Information

Mutant Name	FN856-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN856-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 19

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1434883	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g03530
SBS	Chr1	4040485	A-G	HOMO	INTERGENIC
SBS	Chr2	12067248	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20460
SBS	Chr2	17743395	A-G	HET	INTRON
SBS	Chr3	11055598	G-C	HOMO	INTERGENIC
SBS	Chr3	18029848	C-T	HOMO	INTRON
SBS	Chr4	11085661	T-G	HET	INTERGENIC
SBS	Chr5	25804837	A-T	HET	INTRON
SBS	Chr6	15093261	C-T	HET	INTERGENIC
SBS	Chr7	13875329	T-G	HET	INTERGENIC
SBS	Chr7	20058798	A-T	HOMO	INTRON
SBS	Chr8	169579	C-A	HOMO	INTERGENIC
SBS	Chr9	3643453	A-G	HET	INTERGENIC
SBS	Chr9	5489209	C-T	HET	INTRON
SBS	Chr9	9599160	G-A	HET	INTERGENIC
SBS	Chr9	19906985	A-T	HET	INTERGENIC
SBS	Chr11	2175264	G-A	HET	INTERGENIC
SBS	Chr12	18152283	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g30250
SBS	Chr12	20156565	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33320

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2948532	2948545	13	LOC_Os12g06210
Deletion	Chr12	4830771	4830789	18
Deletion	Chr9	11675190	11675191	1
Deletion	Chr6	16212001	16372000	160000	21
Deletion	Chr7	17221723	17221724	1
Deletion	Chr7	19986194	19986196	2	LOC_Os07g33440
Deletion	Chr10	20883814	20883828	14
Deletion	Chr8	25742001	25810000	68000	16
Deletion	Chr5	28763340	28763347	7	LOC_Os05g50190

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr9	8272900	8272901	2
Insertion	Chr1	15501401	15501406	6

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	33534710	33534961

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	14264197	Chr6	16211848	LOC_Os12g24880