Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14819576	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g26160
SBS	Chr10	22905633	G-T	HOMO	INTERGENIC
SBS	Chr10	6840727	C-T	HET	INTRON
SBS	Chr11	15185014	G-A	HET	INTERGENIC
SBS	Chr11	24718007	T-C	HET	UTR_3_PRIME
SBS	Chr11	25232820	A-G	HET	INTERGENIC
SBS	Chr11	4698362	C-A	HET	INTRON
SBS	Chr2	11261462	A-T	HET	INTERGENIC
SBS	Chr2	2071176	G-A	HET	INTRON
SBS	Chr2	23993025	A-G	HOMO	INTRON
SBS	Chr2	6562611	T-A	HET	INTERGENIC
SBS	Chr2	9446898	A-C	HET	UTR_5_PRIME
SBS	Chr3	19929010	G-A	HOMO	INTERGENIC
SBS	Chr3	31378840	T-C	HET	INTRON
SBS	Chr4	19455058	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	21165732	C-T	HET	INTERGENIC
SBS	Chr4	30633279	A-G	HOMO	INTRON
SBS	Chr4	35460686	A-T	HET	INTERGENIC
SBS	Chr5	12100533	G-A	HET	INTRON
SBS	Chr5	12100536	T-G	HET	INTRON
SBS	Chr5	19043028	A-G	HOMO	INTRON
SBS	Chr6	26908908	A-T	HET	INTERGENIC
SBS	Chr7	10367987	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g17540
SBS	Chr7	23628969	G-A	HET	INTERGENIC
SBS	Chr8	10419855	A-G	HET	INTERGENIC
SBS	Chr8	24446542	C-G	HET	SYNONYMOUS_CODING
SBS	Chr9	9948756	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g16290

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	98751	98794	43
Deletion	Chr6	6665112	6665286	174
Deletion	Chr7	7101948	7101966	18
Deletion	Chr6	8452362	8452371	9
Deletion	Chr4	9338573	9338585	12
Deletion	Chr10	9923918	9923919	1
Deletion	Chr7	10149838	10149839	1
Deletion	Chr2	10156725	10156736	11
Deletion	Chr11	10909410	10909424	14
Deletion	Chr3	11109872	11109877	5	LOC_Os03g19760
Deletion	Chr12	13757444	13757478	34
Deletion	Chr11	17159730	17159734	4
Deletion	Chr10	17164367	17164373	6
Deletion	Chr7	19975458	19975460	2
Deletion	Chr9	20175260	20175277	17
Deletion	Chr6	21758682	21758683	1
Deletion	Chr5	24492530	24492532	2	LOC_Os05g41820
Deletion	Chr2	24875830	24875916	86
Deletion	Chr2	26488765	26488786	21
Deletion	Chr5	27517474	27517487	13
Deletion	Chr1	38094665	38094666	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	25810310	25810321	12	LOC_Os11g42850
Insertion	Chr12	12880512	12880512	1
Insertion	Chr2	17850754	17850755	2
Insertion	Chr3	6058273	6058276	4
Insertion	Chr8	26530008	26530008	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	34844643	34849994	LOC_Os03g61400

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	28717930	Chr2	6171094
Translocation	Chr3	34850031	Chr2	29747193	LOC_Os02g48590
Translocation	Chr3	34850289	Chr2	29747027	LOC_Os02g48590

Main menu