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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7198479	T-C	HET	INTRON
SBS	Chr1	16884795	G-A	HOMO	INTRON
SBS	Chr1	24498579	C-T	HET	INTERGENIC
SBS	Chr2	2548909	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	23801868	T-A	HOMO	INTERGENIC
SBS	Chr2	30261584	T-A	HET	INTRON
SBS	Chr2	30888146	G-T	HET	INTERGENIC
SBS	Chr3	16209305	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	35590075	C-G	HOMO	INTRON
SBS	Chr4	13434260	G-A	HOMO	INTRON
SBS	Chr4	22470500	C-T	HET	INTERGENIC
SBS	Chr4	22831446	G-A	HET	INTERGENIC
SBS	Chr4	29025447	C-T	HET	INTERGENIC
SBS	Chr4	30687030	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g51786
SBS	Chr4	30687032	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	30906780	C-T	HET	INTRON
SBS	Chr5	10276634	C-A	HET	INTERGENIC
SBS	Chr5	13371817	C-T	HET	INTERGENIC
SBS	Chr5	25459045	C-T	HOMO	INTRON
SBS	Chr6	10605661	A-T	HET	INTERGENIC
SBS	Chr7	25326040	A-T	HET	INTERGENIC
SBS	Chr8	13772864	C-A	HOMO	INTERGENIC
SBS	Chr9	3534477	C-G	HET	INTERGENIC
SBS	Chr9	4945289	C-A	HET	INTERGENIC
SBS	Chr9	16757713	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27580
SBS	Chr9	18697278	C-T	HET	INTERGENIC
SBS	Chr11	8620206	G-A	HET	SYNONYMOUS_CODING

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	928051	928058	7
Deletion	Chr5	1615820	1615821	1
Deletion	Chr9	2337222	2337224	2
Deletion	Chr5	3481852	3481854	2
Deletion	Chr2	5751985	5784628	32643	6
Deletion	Chr1	6121165	6121166	1
Deletion	Chr4	12617797	12617802	5
Deletion	Chr4	12791891	12791899	8	LOC_Os04g22590
Deletion	Chr5	13373657	13373662	5
Deletion	Chr3	14779680	14779813	133
Deletion	Chr12	15005958	15018185	12227	3
Deletion	Chr5	16078512	16078528	16
Deletion	Chr1	16082751	16082758	7
Deletion	Chr9	18427620	18427626	6	LOC_Os09g30260
Deletion	Chr8	18814001	19010000	196000	22
Deletion	Chr7	20765018	20765022	4	LOC_Os07g34640
Deletion	Chr4	21910960	21910970	10
Deletion	Chr12	22426694	22426695	1	LOC_Os12g36620
Deletion	Chr2	22781045	22781046	1
Deletion	Chr12	23439347	23439348	1
Deletion	Chr6	25355011	25379161	24150	3
Deletion	Chr2	25937001	25972000	35000	6
Deletion	Chr6	27486279	27486282	3
Deletion	Chr4	30972348	30972352	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	21524100	21524112	13
Insertion	Chr1	43164640	43164640	1
Insertion	Chr10	9403510	9403510	1
Insertion	Chr5	4925578	4925578	1
Insertion	Chr7	24033926	24033926	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	969203	1151507	LOC_Os06g02700
Inversion	Chr6	969217	1151846	LOC_Os06g02700
Inversion	Chr7	8641936	10486434	LOC_Os07g15080
Inversion	Chr12	13379536	13403669
Inversion	Chr8	18813622	19337331	LOC_Os08g30550
Inversion	Chr8	19009798	19337334

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1151510	Chr4	27493500
Translocation	Chr10	5710159	Chr8	1219451	LOC_Os08g02870
Translocation	Chr2	5784628	Chr1	42105656
Translocation	Chr12	13379645	Chr1	33543808
Translocation	Chr12	13394795	Chr3	35423621
Translocation	Chr12	13396684	Chr3	5009457
Translocation	Chr12	15005961	Chr1	42105628
Translocation	Chr12	15018161	Chr2	5784333

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