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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1926552	C-A	HOMO	INTERGENIC
SBS	Chr1	19850132	T-C	HET	INTERGENIC
SBS	Chr1	21064144	T-C	HOMO	INTERGENIC
SBS	Chr1	36117021	C-G	HOMO	INTERGENIC
SBS	Chr1	39813333	A-T	HOMO	INTRON
SBS	Chr10	16932419	A-T	HOMO	INTERGENIC
SBS	Chr11	21812560	A-G	HET	INTERGENIC
SBS	Chr11	9613939	T-G	HET	INTERGENIC
SBS	Chr12	11339818	T-A	HOMO	INTRON
SBS	Chr12	12598716	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g22310
SBS	Chr12	21020626	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g34640
SBS	Chr12	22227870	G-A	HET	INTERGENIC
SBS	Chr12	2578588	A-T	HET	INTERGENIC
SBS	Chr12	2787580	A-T	HET	INTERGENIC
SBS	Chr2	15586511	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g26550
SBS	Chr2	17704994	C-A	HET	INTRON
SBS	Chr3	29387144	C-T	HOMO	INTRON
SBS	Chr3	5246979	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g10290
SBS	Chr4	7612793	C-A	HOMO	INTRON
SBS	Chr5	14699983	C-T	HET	INTRON
SBS	Chr5	6960589	A-T	HOMO	INTRON
SBS	Chr6	1119751	T-A	HOMO	INTERGENIC
SBS	Chr6	12835368	C-T	HET	INTERGENIC
SBS	Chr6	15166475	A-C	HET	INTERGENIC
SBS	Chr6	20546556	G-A	HOMO	INTERGENIC
SBS	Chr6	27141149	C-T	HET	INTRON
SBS	Chr6	7514170	C-T	HOMO	INTERGENIC
SBS	Chr7	15640453	G-T	HET	INTERGENIC
SBS	Chr7	27586274	G-T	HOMO	INTRON
SBS	Chr7	5592825	G-A	HET	INTERGENIC
SBS	Chr7	5819392	G-A	HET	INTERGENIC
SBS	Chr8	16121298	G-A	HET	INTERGENIC
SBS	Chr8	16572838	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g27120
SBS	Chr8	24755525	C-G	HOMO	INTRON
SBS	Chr9	3426896	T-A	HET	INTERGENIC
SBS	Chr9	6661977	C-T	HOMO	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	4260204	4260207	3
Deletion	Chr12	4524563	4524564	1
Deletion	Chr7	4552474	4554705	2231	LOC_Os07g08810
Deletion	Chr7	6826000	6826001	1
Deletion	Chr3	7727509	7727510	1
Deletion	Chr3	14542597	14542598	1
Deletion	Chr6	16677844	16677896	52
Deletion	Chr7	18469455	18469461	6
Deletion	Chr12	21020563	21020564	1	LOC_Os12g34640
Deletion	Chr7	26461964	26461972	8
Deletion	Chr4	29402058	29402059	1
Deletion	Chr4	29735669	29735679	10
Deletion	Chr6	30299714	30299717	3
Deletion	Chr1	36052160	36052163	3
Deletion	Chr1	36475001	36628000	153000	22

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	23798371	23798372	2
Insertion	Chr1	30487098	30487098	1
Insertion	Chr10	4917490	4917491	2
Insertion	Chr2	24179472	24179473	2
Insertion	Chr2	9373856	9373856	1
Insertion	Chr5	5637477	5637478	2
Insertion	Chr8	20836443	20836444	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4282949	4356220
Inversion	Chr1	36563889	36567154	LOC_Os01g63100

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	8085893	Chr2	35076926
Translocation	Chr7	11961824	Chr1	36563005
Translocation	Chr7	11961842	Chr1	36563985
Translocation	Chr6	13891311	Chr3	23252559

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