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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27165378	A-T	HET	INTERGENIC
SBS	Chr1	38773988	T-A	HOMO	INTERGENIC
SBS	Chr1	39856462	C-G	HOMO	INTERGENIC
SBS	Chr12	16886250	T-A	HET	INTERGENIC
SBS	Chr2	19274648	C-T	HET	INTERGENIC
SBS	Chr2	22714055	C-A	HET	INTERGENIC
SBS	Chr3	10201003	A-G	HET	INTRON
SBS	Chr3	1982174	C-T	HET	INTERGENIC
SBS	Chr3	3909490	G-T	HET	INTERGENIC
SBS	Chr4	28036085	G-A	HOMO	INTERGENIC
SBS	Chr4	7564154	T-A	HOMO	INTRON
SBS	Chr4	7564155	C-A	HOMO	INTRON
SBS	Chr4	7564156	T-A	HOMO	INTRON
SBS	Chr4	8252398	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr6	27106216	C-A	HET	INTERGENIC
SBS	Chr6	27106217	T-A	HET	INTERGENIC
SBS	Chr7	10391017	C-T	HET	INTERGENIC
SBS	Chr7	12517277	G-A	HET	INTERGENIC
SBS	Chr7	13541399	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g23944
SBS	Chr7	15634834	G-T	HET	INTERGENIC
SBS	Chr7	17475686	C-T	HET	INTRON
SBS	Chr7	17733989	G-C	HET	INTERGENIC
SBS	Chr7	2458484	T-G	HET	UTR_3_PRIME
SBS	Chr7	25105420	A-T	HOMO	INTERGENIC
SBS	Chr7	6656326	T-G	HET	INTERGENIC
SBS	Chr7	9990945	C-T	HET	INTRON
SBS	Chr8	12451354	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20720
SBS	Chr8	16072755	C-T	HET	INTERGENIC
SBS	Chr8	26322774	C-T	HOMO	INTERGENIC
SBS	Chr8	6498863	C-A	HET	SYNONYMOUS_CODING
SBS	Chr9	1915710	G-A	HET	INTERGENIC
SBS	Chr9	5541739	G-A	HET	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	5815678	5815682	4
Deletion	Chr11	8722180	8722188	8
Deletion	Chr10	9315952	9315953	1	LOC_Os10g18340
Deletion	Chr11	9587210	9587224	14
Deletion	Chr1	11750916	11750917	1
Deletion	Chr7	13072623	13072661	38	LOC_Os07g23190
Deletion	Chr4	17362807	17362808	1
Deletion	Chr9	18410504	18410515	11
Deletion	Chr2	19053381	19053389	8
Deletion	Chr7	25104885	25104913	28
Deletion	Chr8	26313141	26313154	13
Deletion	Chr3	29020872	29020874	2

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	43071117	43071118	2
Insertion	Chr1	978556	978556	1
Insertion	Chr10	18961710	18961711	2
Insertion	Chr11	28862757	28862759	3
Insertion	Chr2	26277974	26277981	8
Insertion	Chr5	6598645	6598645	1
Insertion	Chr7	25105410	25105411	2
Insertion	Chr8	16396233	16396258	26

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	479817	534905	2
Inversion	Chr12	13379536	13403672
Inversion	Chr7	13538627	13623151	LOC_Os07g23944
Inversion	Chr5	18326854	18640142

No Translocation

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