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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13269585	G-T	HOMO	INTERGENIC
SBS	Chr1	41638185	C-T	HOMO	INTERGENIC
SBS	Chr2	4623953	A-G	HOMO	INTERGENIC
SBS	Chr3	19275833	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr3	31207889	G-A	HET	UTR_3_PRIME
SBS	Chr4	17131111	C-A	HET	INTERGENIC
SBS	Chr5	9847410	C-T	HOMO	INTERGENIC
SBS	Chr6	9221615	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g16200
SBS	Chr6	14631535	G-A	HOMO	INTERGENIC
SBS	Chr6	16917794	T-A	HOMO	INTERGENIC
SBS	Chr7	2676330	C-T	HET	INTERGENIC
SBS	Chr7	8393073	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g14710
SBS	Chr8	19950721	G-A	HET	UTR_3_PRIME
SBS	Chr9	18819576	C-T	HOMO	INTERGENIC
SBS	Chr10	3602376	T-A	HET	INTERGENIC
SBS	Chr10	4504202	C-T	HET	INTERGENIC
SBS	Chr11	9485197	C-T	HOMO	INTERGENIC
SBS	Chr11	17917803	G-C	HOMO	INTERGENIC
SBS	Chr11	23324428	C-T	HET	INTERGENIC
SBS	Chr11	24245228	A-G	HET	INTERGENIC
SBS	Chr12	1358973	G-A	HET	INTERGENIC
SBS	Chr12	2579428	C-T	HET	INTERGENIC
SBS	Chr12	10120108	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g17670

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1491105	1491106	1
Deletion	Chr2	5118759	5148759	30000	4
Deletion	Chr4	5503781	5503787	6
Deletion	Chr9	5539572	5539573	1	LOC_Os09g10180
Deletion	Chr4	7718294	7718295	1
Deletion	Chr9	9437001	9532000	95000	19
Deletion	Chr10	11724613	11724625	12
Deletion	Chr5	12128599	12128610	11
Deletion	Chr12	12600507	12600510	3
Deletion	Chr9	15832370	15832377	7
Deletion	Chr8	16364708	16365889	1181
Deletion	Chr3	18157498	18157524	26
Deletion	Chr2	18908400	18908412	12
Deletion	Chr7	19286319	19286330	11
Deletion	Chr7	19304319	19304330	11
Deletion	Chr3	19517660	19517798	138
Deletion	Chr10	19724532	19724540	8
Deletion	Chr11	20278578	20278585	7
Deletion	Chr3	20852136	20852137	1
Deletion	Chr6	22129179	22129182	3
Deletion	Chr8	24832558	24832562	4
Deletion	Chr4	25733085	25733102	17
Deletion	Chr2	26962085	26962091	6	LOC_Os02g44520
Deletion	Chr1	43041671	43041675	4

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	10133374	10133375	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	25497423	25776134	LOC_Os11g42800

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2891194	Chr5	3288571	LOC_Os09g06160
Translocation	Chr6	4196659	Chr1	11494164
Translocation	Chr11	11555168	Chr4	27438240	LOC_Os11g20060
Translocation	Chr10	12448065	Chr5	15461887
Translocation	Chr11	25367585	Chr7	4602370

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