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| Mutant Information |
|---|
| Mutant Name | FN862-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN862-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12143477 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 6114295 | A-G | HET | INTRON | |
| SBS | Chr10 | 21037612 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os10g39430 |
| SBS | Chr11 | 24196421 | T-C | HOMO | INTERGENIC | |
| SBS | Chr12 | 4744226 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 12657694 | A-C | HOMO | INTERGENIC | |
| SBS | Chr2 | 1970538 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g04450 |
| SBS | Chr4 | 2108611 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 27163100 | G-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 29388788 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 7845583 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 7845584 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 7845585 | T-A | HET | INTERGENIC | |
| SBS | Chr5 | 16662109 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 29754114 | A-G | HET | INTERGENIC | |
| SBS | Chr6 | 6168588 | T-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 18941136 | G-A | HET | INTRON | |
| SBS | Chr7 | 24780221 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 27276651 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr8 | 12014709 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g20050 |
| SBS | Chr8 | 14181853 | A-G | HET | INTERGENIC | |
| SBS | Chr9 | 19683030 | T-A | HET | INTERGENIC | |
| SBS | Chr9 | 21743166 | G-A | HET | SYNONYMOUS_CODING |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1081962 | 1081967 | 5 | |
| Deletion | Chr9 | 1461745 | 1461756 | 11 | |
| Deletion | Chr1 | 3519851 | 3519854 | 3 | |
| Deletion | Chr12 | 5703380 | 5704899 | 1519 | LOC_Os12g10670 |
| Deletion | Chr11 | 6665399 | 6665404 | 5 | |
| Deletion | Chr9 | 11044843 | 11044846 | 3 | |
| Deletion | Chr9 | 11661882 | 11661885 | 3 | |
| Deletion | Chr1 | 13111588 | 13111591 | 3 | |
| Deletion | Chr12 | 13791001 | 13842000 | 51000 | 7 |
| Deletion | Chr8 | 16592122 | 16592123 | 1 | |
| Deletion | Chr7 | 17228075 | 17228077 | 2 | |
| Deletion | Chr11 | 18880540 | 18880541 | 1 | |
| Deletion | Chr2 | 21522300 | 21522315 | 15 | LOC_Os02g35820 |
| Deletion | Chr8 | 21985953 | 21985961 | 8 | |
| Deletion | Chr5 | 28103676 | 28103680 | 4 | |
| Deletion | Chr7 | 28174773 | 28174775 | 2 | |
| Deletion | Chr1 | 39865629 | 39865634 | 5 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 17459338 | 17459340 | 3 | |
| Insertion | Chr4 | 11216121 | 11216121 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 26874075 | 26898281 | |
| Inversion | Chr6 | 26875814 | 26898290 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5703425 | Chr1 | 6013944 | LOC_Os12g10670 |
| Translocation | Chr12 | 5704884 | Chr1 | 6013936 | LOC_Os12g10670 |