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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9999549	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g17370
SBS	Chr1	12434342	T-C	HET	INTERGENIC
SBS	Chr1	26363480	A-T	HET	INTERGENIC
SBS	Chr1	29825753	T-C	HOMO	INTERGENIC
SBS	Chr1	36930650	C-A	HET	INTERGENIC
SBS	Chr2	18530418	G-A	HET	INTERGENIC
SBS	Chr2	18738977	A-G	HET	INTERGENIC
SBS	Chr2	18861906	C-T	HET	UTR_3_PRIME
SBS	Chr2	34814220	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g56800
SBS	Chr2	34918073	T-A	HET	INTERGENIC
SBS	Chr3	7568065	A-T	HET	INTERGENIC
SBS	Chr3	7746068	T-A	HET	SYNONYMOUS_CODING
SBS	Chr3	16340082	T-C	HOMO	INTERGENIC
SBS	Chr3	31501792	G-A	HET	INTRON
SBS	Chr3	34105950	G-T	HOMO	INTERGENIC
SBS	Chr4	10268270	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	23610392	A-G	HET	INTRON
SBS	Chr5	9588499	C-A	HET	INTRON
SBS	Chr6	1481438	C-T	HET	INTRON
SBS	Chr6	2496126	A-T	HET	INTERGENIC
SBS	Chr6	2617627	C-T	HOMO	INTRON
SBS	Chr6	25571408	G-A	HET	INTERGENIC
SBS	Chr6	28933990	G-A	HOMO	INTERGENIC
SBS	Chr7	8255683	C-A	HET	INTERGENIC
SBS	Chr7	8255684	G-T	HET	INTERGENIC
SBS	Chr7	8834459	T-C	HET	INTERGENIC
SBS	Chr7	18008446	G-A	HET	INTERGENIC
SBS	Chr7	27623128	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46300
SBS	Chr9	802053	A-T	HET	INTRON
SBS	Chr9	11413928	A-G	HOMO	INTERGENIC
SBS	Chr9	12027253	C-T	HET	INTRON
SBS	Chr9	12930967	A-G	HET	INTERGENIC
SBS	Chr9	14249636	G-A	HET	INTERGENIC
SBS	Chr9	18867078	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os09g31380
SBS	Chr11	8521128	A-G	HOMO	INTERGENIC
SBS	Chr11	20404645	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34824
SBS	Chr11	21561929	A-G	HET	SYNONYMOUS_CODING
SBS	Chr12	15235441	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26150

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1689677	1689678	1
Deletion	Chr11	2067057	2067078	21
Deletion	Chr3	4377963	4377973	10	LOC_Os03g08510
Deletion	Chr5	5348488	5348491	3
Deletion	Chr1	5480001	5508000	28000	4
Deletion	Chr11	7798054	7798070	16	LOC_Os11g14050
Deletion	Chr2	9028158	9028161	3
Deletion	Chr12	10289809	10289814	5
Deletion	Chr5	10418867	10418876	9
Deletion	Chr9	11777545	11777551	6
Deletion	Chr7	12775851	12775852	1
Deletion	Chr11	13388733	13388736	3
Deletion	Chr7	14484661	14484670	9
Deletion	Chr2	17236813	17236816	3
Deletion	Chr5	18189315	18189328	13
Deletion	Chr3	20216383	20216384	1
Deletion	Chr5	21244165	21244172	7
Deletion	Chr11	21561987	21562007	20	LOC_Os11g36550
Deletion	Chr6	23828703	23828704	1
Deletion	Chr8	24457867	24457868	1
Deletion	Chr2	25030021	25030023	2
Deletion	Chr6	25889473	25889475	2
Deletion	Chr12	27153233	27153238	5
Deletion	Chr4	30152645	30152653	8
Deletion	Chr3	33103263	33103265	2	LOC_Os03g58150
Deletion	Chr1	33976660	33976661	1	2
Deletion	Chr3	34112712	34112715	3
Deletion	Chr3	35263144	35263168	24
Deletion	Chr1	42677937	42677939	2	LOC_Os01g73656

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	11342124	11342124	1
Insertion	Chr4	21374534	21374534	1	LOC_Os04g35170

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	8928660	15935317

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	27797888	Chr5	23590043	LOC_Os05g40160

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