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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12513187	G-A	HOMO	INTRON
SBS	Chr1	21428496	C-G	HET	INTRON
SBS	Chr10	21847518	G-C	HET	INTERGENIC
SBS	Chr11	13069066	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr11	19416142	A-T	HET	INTERGENIC
SBS	Chr11	27679181	T-C	HET	INTERGENIC
SBS	Chr12	20323476	A-G	HET	INTERGENIC
SBS	Chr12	26601621	T-A	HET	INTRON
SBS	Chr2	29176649	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g47730
SBS	Chr2	29759634	A-G	HET	INTERGENIC
SBS	Chr2	35101817	C-A	HET	INTERGENIC
SBS	Chr3	12020222	C-T	HET	INTRON
SBS	Chr3	22801073	C-T	HET	INTERGENIC
SBS	Chr3	9374464	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g16870
SBS	Chr4	11421381	T-C	HET	INTERGENIC
SBS	Chr4	11647730	A-T	HET	INTERGENIC
SBS	Chr4	14044405	T-A	HET	INTRON
SBS	Chr4	26048199	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g43930
SBS	Chr5	15305393	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	15808674	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27170
SBS	Chr5	17382958	C-T	HET	INTERGENIC
SBS	Chr5	21650806	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	23175989	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g39490
SBS	Chr5	29158615	C-T	HOMO	INTRON
SBS	Chr6	3562094	A-C	HET	INTERGENIC
SBS	Chr6	589856	T-C	HET	INTRON
SBS	Chr6	7797539	G-C	HET	INTERGENIC
SBS	Chr7	10379874	C-A	HET	INTERGENIC
SBS	Chr7	13661361	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g24100
SBS	Chr7	15686543	A-T	HET	INTRON
SBS	Chr8	9630218	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g15840
SBS	Chr9	6725153	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11940
SBS	Chr9	677968	G-C	HET	INTERGENIC
SBS	Chr9	7508962	T-G	HET	INTRON

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2759605	2759610	5	LOC_Os07g05740
Deletion	Chr7	3576922	3576923	1	LOC_Os07g07220
Deletion	Chr6	4701438	4701446	8	LOC_Os06g09340
Deletion	Chr9	7134748	7134775	27	LOC_Os09g12480
Deletion	Chr8	8689545	8689546	1
Deletion	Chr10	8894339	8899662	5323	LOC_Os10g17610
Deletion	Chr10	8991432	8991446	14
Deletion	Chr4	11560894	11560896	2
Deletion	Chr6	14950739	14950748	9
Deletion	Chr3	16110601	16110602	1
Deletion	Chr2	18307094	18307123	29
Deletion	Chr2	18587001	18639000	52000	4
Deletion	Chr2	18824410	18824416	6
Deletion	Chr4	19644003	19644005	2
Deletion	Chr3	20870963	20870971	8
Deletion	Chr10	21847494	21847495	1
Deletion	Chr11	23821439	23821451	12
Deletion	Chr7	25804716	25804739	23	LOC_Os07g43070
Deletion	Chr2	28240901	28240916	15
Deletion	Chr2	28839211	28839215	4	LOC_Os02g47260
Deletion	Chr4	31104850	31104879	29
Deletion	Chr3	33799403	33799432	29

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	23050004	23050005	2
Insertion	Chr3	10202816	10202821	6
Insertion	Chr6	25246934	25246935	2
Insertion	Chr7	118902	118902	1

No Inversion

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4547136	Chr8	16818282
Translocation	Chr4	9345010	Chr2	14999702	LOC_Os04g17050
Translocation	Chr12	24624115	Chr4	9343240	LOC_Os04g17050
Translocation	Chr12	24627147	Chr2	18638084
Translocation	Chr12	25344381	Chr2	32382418
Translocation	Chr12	25346020	Chr2	32382385	LOC_Os12g40940

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