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Mutant Information

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32691027	G-A	HOMO	INTERGENIC
SBS	Chr1	32822110	C-T	HOMO	INTERGENIC
SBS	Chr1	7482233	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr10	14981912	C-T	HET	INTERGENIC
SBS	Chr10	4489854	C-A	HET	INTERGENIC
SBS	Chr11	10614996	G-T	HOMO	INTRON
SBS	Chr11	10615010	T-G	HOMO	INTRON
SBS	Chr11	10615034	G-A	HOMO	INTRON
SBS	Chr11	17940552	G-T	HET	UTR_3_PRIME
SBS	Chr11	21718428	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g36780
SBS	Chr12	20142167	T-A	HET	INTERGENIC
SBS	Chr3	11933751	G-A	HET	INTERGENIC
SBS	Chr3	8499599	C-A	HET	INTERGENIC
SBS	Chr4	13306689	G-A	HET	INTERGENIC
SBS	Chr4	28550098	A-T	HET	INTERGENIC
SBS	Chr5	1579761	A-G	HET	INTRON
SBS	Chr6	1170068	A-G	HET	INTERGENIC
SBS	Chr6	14829901	A-T	HET	INTRON
SBS	Chr6	3466060	C-T	HET	INTERGENIC
SBS	Chr6	4101903	A-G	HET	INTERGENIC
SBS	Chr7	11202939	G-A	HET	INTRON
SBS	Chr7	13835807	C-T	HET	INTERGENIC
SBS	Chr7	14659052	G-A	HET	INTRON
SBS	Chr7	27632622	A-T	HET	INTRON
SBS	Chr7	3435585	G-A	HET	INTERGENIC
SBS	Chr9	9672269	C-T	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1306456	1306467	11	LOC_Os04g03140
Deletion	Chr12	1584780	1584804	24
Deletion	Chr9	3607255	3607256	1
Deletion	Chr2	5163005	5170016	7011	2
Deletion	Chr5	5271648	5271650	2
Deletion	Chr7	8614001	8635000	21000	5
Deletion	Chr11	9961619	9961641	22	LOC_Os11g17799
Deletion	Chr11	9971171	9971174	3
Deletion	Chr5	10592816	10592828	12
Deletion	Chr12	12518001	12868000	350000	58
Deletion	Chr12	12877001	13002000	125000	17
Deletion	Chr11	13657691	13657716	25
Deletion	Chr3	14695968	14695969	1
Deletion	Chr6	15678768	15678775	7
Deletion	Chr5	17817001	17817003	2
Deletion	Chr1	20721701	20721702	1
Deletion	Chr9	21085493	21085496	3
Deletion	Chr7	27625516	27625517	1	LOC_Os07g46310
Deletion	Chr1	32775341	32775345	4	LOC_Os01g56800
Deletion	Chr1	32850747	32850757	10	LOC_Os01g56880
Deletion	Chr1	42749566	42749567	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	17838567	17838570	4
Insertion	Chr3	23422099	23422099	1
Insertion	Chr5	22133020	22133020	1
Insertion	Chr5	8392343	8392344	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr9	4744600	5714268
Inversion	Chr9	4744707	5714463
Inversion	Chr6	21084603	21152209

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4744706	Chr2	18471945
Translocation	Chr9	14290302	Chr4	2584822	2
Translocation	Chr12	14678872	Chr2	18476532
Translocation	Chr12	14678875	Chr2	18472031
Translocation	Chr8	18930356	Chr1	3645064
Translocation	Chr11	23663336	Chr5	6870534

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