Search Results
Mutant Information |
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Mutant Name | FN865-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN865-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 26
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 7482233 | C-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr1 | 32691027 | G-A | HOMO | INTERGENIC | |
SBS | Chr1 | 32822110 | C-T | HOMO | INTERGENIC | |
SBS | Chr3 | 8499599 | C-A | HET | INTERGENIC | |
SBS | Chr3 | 11933751 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 13306689 | G-A | HET | INTERGENIC | |
SBS | Chr4 | 28550098 | A-T | HET | INTERGENIC | |
SBS | Chr5 | 1579761 | A-G | HET | INTRON | |
SBS | Chr6 | 1170068 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 3466060 | C-T | HET | INTERGENIC | |
SBS | Chr6 | 4101903 | A-G | HET | INTERGENIC | |
SBS | Chr6 | 14829901 | A-T | HET | INTRON | |
SBS | Chr7 | 3435585 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 11202939 | G-A | HET | INTRON | |
SBS | Chr7 | 13835807 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 14659052 | G-A | HET | INTRON | |
SBS | Chr7 | 27632622 | A-T | HET | INTRON | |
SBS | Chr9 | 9672269 | C-T | HET | INTERGENIC | |
SBS | Chr10 | 4489854 | C-A | HET | INTERGENIC | |
SBS | Chr10 | 14981912 | C-T | HET | INTERGENIC | |
SBS | Chr11 | 10614996 | G-T | HOMO | INTRON | |
SBS | Chr11 | 10615010 | T-G | HOMO | INTRON | |
SBS | Chr11 | 10615034 | G-A | HOMO | INTRON | |
SBS | Chr11 | 17940552 | G-T | HET | UTR_3_PRIME | |
SBS | Chr11 | 21718428 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g36780 |
SBS | Chr12 | 20142167 | T-A | HET | INTERGENIC |
Deletions: 21
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr4 | 1306456 | 1306467 | 11 | LOC_Os04g03140 |
Deletion | Chr12 | 1584780 | 1584804 | 24 | |
Deletion | Chr9 | 3607255 | 3607256 | 1 | |
Deletion | Chr2 | 5163005 | 5170016 | 7011 | 2 |
Deletion | Chr5 | 5271648 | 5271650 | 2 | |
Deletion | Chr7 | 8614001 | 8635000 | 21000 | 5 |
Deletion | Chr11 | 9961619 | 9961641 | 22 | LOC_Os11g17799 |
Deletion | Chr11 | 9971171 | 9971174 | 3 | |
Deletion | Chr5 | 10592816 | 10592828 | 12 | |
Deletion | Chr12 | 12518001 | 12868000 | 350000 | 58 |
Deletion | Chr12 | 12877001 | 13002000 | 125000 | 17 |
Deletion | Chr11 | 13657691 | 13657716 | 25 | |
Deletion | Chr3 | 14695968 | 14695969 | 1 | |
Deletion | Chr6 | 15678768 | 15678775 | 7 | |
Deletion | Chr5 | 17817001 | 17817003 | 2 | |
Deletion | Chr1 | 20721701 | 20721702 | 1 | |
Deletion | Chr9 | 21085493 | 21085496 | 3 | |
Deletion | Chr7 | 27625516 | 27625517 | 1 | LOC_Os07g46310 |
Deletion | Chr1 | 32775341 | 32775345 | 4 | LOC_Os01g56800 |
Deletion | Chr1 | 32850747 | 32850757 | 10 | LOC_Os01g56880 |
Deletion | Chr1 | 42749566 | 42749567 | 1 |
Insertions: 4
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr10 | 17838567 | 17838570 | 4 | |
Insertion | Chr5 | 8392343 | 8392344 | 2 | |
Insertion | Chr3 | 23422099 | 23422099 | 1 | |
Insertion | Chr5 | 22133020 | 22133020 | 1 |
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr9 | 4744600 | 5714268 | |
Inversion | Chr9 | 4744707 | 5714463 | |
Inversion | Chr6 | 21084603 | 21152209 |
Translocations: 6
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr9 | 4744706 | Chr2 | 18471945 | |
Translocation | Chr9 | 14290302 | Chr4 | 2584822 | 2 |
Translocation | Chr12 | 14678872 | Chr2 | 18476532 | |
Translocation | Chr12 | 14678875 | Chr2 | 18472031 | |
Translocation | Chr8 | 18930356 | Chr1 | 3645064 | |
Translocation | Chr11 | 23663336 | Chr5 | 6870534 |