Search Results
| Mutant Information |
|---|
| Mutant Name | FN866-S [Download] |
| Generation | M2-SOS |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN866-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 19
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13099215 | A-G | HOMO | INTERGENIC | |
| SBS | Chr1 | 19106605 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 19576746 | T-C | HET | INTERGENIC | |
| SBS | Chr1 | 21442377 | G-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 2555455 | G-T | HOMO | INTRON | |
| SBS | Chr3 | 24091578 | C-G | HET | INTERGENIC | |
| SBS | Chr3 | 29334070 | T-C | HOMO | INTRON | |
| SBS | Chr6 | 21027900 | T-C | HET | INTERGENIC | |
| SBS | Chr7 | 13617758 | A-G | HOMO | INTERGENIC | |
| SBS | Chr8 | 16029632 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 16029640 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 16270921 | T-A | HET | INTRON | |
| SBS | Chr8 | 16270922 | C-A | HET | INTRON | |
| SBS | Chr9 | 3081175 | A-G | HET | INTRON | |
| SBS | Chr9 | 13071239 | G-A | HET | INTERGENIC | |
| SBS | Chr10 | 18396583 | T-C | HOMO | INTERGENIC | |
| SBS | Chr10 | 23141948 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr11 | 9563718 | C-A | HET | INTERGENIC | |
| SBS | Chr12 | 12200286 | C-G | HET | INTRON |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 764609 | 764632 | 23 | |
| Deletion | Chr7 | 2639515 | 2639516 | 1 | |
| Deletion | Chr5 | 6567162 | 6567166 | 4 | |
| Deletion | Chr2 | 6694531 | 6694539 | 8 | |
| Deletion | Chr8 | 9019766 | 9019767 | 1 | |
| Deletion | Chr8 | 9829173 | 9829188 | 15 | |
| Deletion | Chr9 | 11177001 | 11209000 | 32000 | 4 |
| Deletion | Chr12 | 12085845 | 12085847 | 2 | LOC_Os12g21500 |
| Deletion | Chr3 | 12518354 | 12518356 | 2 | |
| Deletion | Chr11 | 13442569 | 13442580 | 11 | |
| Deletion | Chr10 | 13559773 | 13559878 | 105 | LOC_Os10g26164 |
| Deletion | Chr8 | 13679813 | 13679814 | 1 | |
| Deletion | Chr2 | 14722370 | 14722374 | 4 | |
| Deletion | Chr10 | 15386176 | 15386178 | 2 | |
| Deletion | Chr7 | 16170761 | 16170773 | 12 | |
| Deletion | Chr4 | 16507191 | 16507195 | 4 | |
| Deletion | Chr8 | 18532948 | 18532949 | 1 | |
| Deletion | Chr12 | 24200544 | 24200545 | 1 | |
| Deletion | Chr3 | 25136298 | 25136300 | 2 | |
| Deletion | Chr6 | 26281482 | 26281484 | 2 | |
| Deletion | Chr2 | 27002690 | 27002695 | 5 | |
| Deletion | Chr1 | 30783269 | 30783270 | 1 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 8687388 | 8687388 | 1 | |
| Insertion | Chr1 | 2076210 | 2076210 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 9568733 | 11782719 | LOC_Os09g15670 |
| Inversion | Chr9 | 11177447 | 11782717 | LOC_Os09g18230 |
| Inversion | Chr4 | 12118205 | 12396176 | LOC_Os04g21890 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 1631173 | Chr11 | 10418311 | LOC_Os12g03940 |
| Translocation | Chr8 | 2171993 | Chr7 | 24487689 | |
| Translocation | Chr4 | 4420415 | Chr1 | 2752282 | 2 |
| Translocation | Chr3 | 30343130 | Chr1 | 9401319 |