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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1016159	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	21197418	A-T	HOMO	INTRON
SBS	Chr1	27303119	A-C	HET	UTR_3_PRIME
SBS	Chr1	39636164	T-C	HOMO	INTERGENIC
SBS	Chr10	21726896	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g40570
SBS	Chr11	14813789	G-T	HET	INTERGENIC
SBS	Chr11	20935465	A-T	HET	INTRON
SBS	Chr11	268828	A-C	HET	INTERGENIC
SBS	Chr12	4011765	C-T	HET	INTERGENIC
SBS	Chr2	31961111	G-A	HOMO	UTR_5_PRIME
SBS	Chr3	11545864	A-T	HOMO	INTERGENIC
SBS	Chr3	30644191	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g53410
SBS	Chr3	8203451	C-A	HET	INTERGENIC
SBS	Chr4	1253610	G-T	HET	INTRON
SBS	Chr4	22161652	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	24822094	C-T	HET	SYNONYMOUS_CODING
SBS	Chr4	27375549	C-A	HET	INTERGENIC
SBS	Chr4	27415322	C-T	HOMO	INTERGENIC
SBS	Chr4	27721432	C-T	HET	INTRON
SBS	Chr4	3184435	C-T	HOMO	INTERGENIC
SBS	Chr5	28563163	T-C	HET	INTERGENIC
SBS	Chr6	30936074	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g51140
SBS	Chr7	14703919	C-A	HET	INTRON
SBS	Chr8	2659571	G-C	HOMO	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	490129	490159	30
Deletion	Chr12	1067375	1067401	26	LOC_Os12g02900
Deletion	Chr4	1247466	1247467	1
Deletion	Chr4	1253735	1253762	27
Deletion	Chr4	3785478	3785486	8
Deletion	Chr2	4256897	4256914	17
Deletion	Chr10	4575320	4575321	1
Deletion	Chr3	5178115	5178117	2	LOC_Os03g10200
Deletion	Chr2	12882157	12882161	4
Deletion	Chr7	13843154	13843160	6
Deletion	Chr6	14545929	14545938	9
Deletion	Chr7	17795001	17840000	45000	7
Deletion	Chr11	17960197	17960203	6
Deletion	Chr10	19813121	19813145	24
Deletion	Chr4	22455186	22455194	8
Deletion	Chr2	25797178	25797184	6
Deletion	Chr1	26315055	26315069	14
Deletion	Chr7	28625314	28625321	7
Deletion	Chr4	34179419	34179424	5	LOC_Os04g57450

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	21516504	21516507	4
Insertion	Chr11	22142323	22142324	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr3	22529074	24365823
Inversion	Chr3	22529085	24360997
Inversion	Chr3	22755122	23028225
Inversion	Chr3	22756306	23028225
Inversion	Chr2	27407956	27726904
Inversion	Chr1	31733680	32449874
Inversion	Chr1	31733692	32449884

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	10362434	Chr1	35702500	LOC_Os01g61710
Translocation	Chr12	17042301	Chr2	23245095
Translocation	Chr10	19848766	Chr2	27407853	LOC_Os10g37070
Translocation	Chr4	21282506	Chr1	35702746	2

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